PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0001s1376.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family C3H
Protein Properties Length: 640aa    MW: 64388.4 Da    PI: 7.8057
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0001s1376.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.5e-06100119626
                          -SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                          C +f + G C++Gd+Ck++H+
  Vocar.0001s1376.1.p 100 CFDFTK-GVCSRGDKCKYSHD 119
                          667888.*************7 PP
2zf-CCCH19.81.4e-06178199426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          ++C +f + G C++G+ C+++H+
  Vocar.0001s1376.1.p 178 AICYDFVK-GVCQRGAECRYSHD 199
                          58******.*************7 PP
3zf-CCCH23.21.2e-07218239426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          e C +++r G C++G++Ck++H 
  Vocar.0001s1376.1.p 218 EVCYDYLR-GRCNRGATCKYSHN 239
                          78******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.53594121IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-594120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-595119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-596119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103128155IPR000571Zinc finger, CCCH-type
SMARTSM003560.28129154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436174201IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4175200IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-4178199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.558214241IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4215240IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-5215239IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5218239IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-4218240IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MDGAFNPALV QLTQRFQEAS LGGGPVDPSV LLGKAGDLLS SAEATTHYSS SESSSAADNL  60
NCQVDSSSLL ESYPGANAAR PSEGTRQTSA TTQEGKAQIC FDFTKGVCSR GDKCKYSHDL  120
ATIVHFNSKE KGICFDYLRN QCHRGLLCRF SHDLSNIAQQ CQVYSNGAKE NKGAKPNAIC  180
YDFVKGVCQR GAECRYSHDL SLIARMARGG SAQPKAGEVC YDYLRGRCNR GATCKYSHNI  240
AFLAAPGFLG SALSSDGAPM AAQAAGPGLP GPGAPLAGLP LAGGPGFVGM GGLPGMAPRL  300
TSALSADQAT LNHVLAAAGP GAVNQMLVAQ AAMQQSTGLA AVAAEAAAAA AEGRRRSASM  360
NGETANDTML VNDQPPVPWT GLPSAPKALA AAQQAALMTN FAAHQRMAQA AAAANMQAFA  420
HMGMQAASAA AAASGSTGGD GLLGPAASGM FGKPPAMGQF NGVPDTGAQG MRRPPLPPGQ  480
MPAELAALLA GGVPENPTLF AETLAAAAKA QAQVHNQNAR IMAAAAAVGA SNGTMVQTSS  540
GLLPSMGSGG VVATSAPSAP QPIPGRESVL VQQAYDGPAG TYNGGSFPVS GNSQSGGGAS  600
VDNGHQSRSA PSSGPLNPVT VNPDLLPMIK EIWSKPGAA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002946451.10.0hypothetical protein VOLCADRAFT_86752, partial
TrEMBLD8TJI30.0D8TJI3_VOLCA; Uncharacterized protein (Fragment)
STRINGXP_002946451.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP35071314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.19e-07C3H family protein