PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0001s1308.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family bZIP
Protein Properties Length: 480aa    MW: 50581.1 Da    PI: 7.7654
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0001s1308.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31e-10248297453
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                           +r+rr+ +NRe+ArrsR+RK++ + +Lee+   Le e++++ ++l +l+
  Vocar.0001s1308.1.p 248 QRRARRMLSNRESARRSRRRKQEHLSKLEEERNILEDERREMEQQLTSLE 297
                          589****************************************9998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.1E-9240297No hitNo description
SMARTSM003383.8E-12245309IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.185247310IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.26E-9249299No hitNo description
PfamPF001707.1E-8249296IPR004827Basic-leucine zipper domain
PROSITE patternPS000360252267IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-4298329No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MSAMERQTSV DDLLGGFWRL GQAGMGRTDS EAAFQEFLKR IPSTTNLAAA VAENAGGTSS  60
QPVASTSSLP SVVLSDVVTT AAAAVGGIPR VPSLELLRQL VHYPGPASSA PAAAAAPAVK  120
AEALPSSTGA SAFRVPEPAD VLKAAAAVPP LPAPVALPAA PPLPAGYPLP GLPALSDLAS  180
LAAVGGAALQ AVPAFAAQAN PLTAALTPAA AAAAALQLGQ LGSLGARLTN NSTAGGVSSD  240
KDMDKVDQRR ARRMLSNRES ARRSRRRKQE HLSKLEEERN ILEDERREME QQLTSLERRT  300
QSLEDENKRL KEENERLRDE LRFLRTEISD RKDRNGYGHY GGRGRGLLRG DSDDEQPVKR  360
HRHSDKSSSE EHPGTAISDL EVEKRPRGLA SGAVAALNGT HSTKHGTSHG GRMGPGGGGG  420
CGGVRERGGS GGGACGGSER GRTEYGRVPR ERERERDRER GRERQRDQEA RDDDEEEDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261268RRSRRRKQ
2263268SRRRKQ
3409417GGRMGPGGG
4455465RDRERGRERQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3DAD21e-139A0A2K3DAD2_CHLRE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP522889