PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0001s1269.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family AP2
Protein Properties Length: 1704aa    MW: 171682 Da    PI: 5.6391
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0001s1269.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2271.1e-08651700154
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                          s ++GV ++k + rW+A + d      +   +lg f+++ eAa+ ++a + + +
  Vocar.0001s1269.1.p 651 SVFRGVVYRKEQRRWAAVLEDG----SSDDQWLGLFDSELEAARVYDAEAFRRY 700
                          689***************9994....25999*******99********988765 PP
2AP228.15e-09870915151
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaark 51 
                          s y+GV wd k+++W+A+I +      +  +  lg+f t e+Aa+a + a +
  Vocar.0001s1269.1.p 870 SVYRGVVWDDKQNQWRAQIAE------NgVTTVLGHFATQEDAARAFDTAVL 915
                          78****************888......339999*************998865 PP
3AP236.21.5e-119531004155
                  AP2    1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55  
                           s+ykGV+w++   +WvA ++d       ++  ++g++ ++e+Aa+a+++ ++++ g
  Vocar.0001s1269.1.p  953 SQYKGVSWNSACSKWVAVLWD----ReLKRARHIGSYESEEDAARAYDKEALRMLG 1004
                           78*******************....3344888*********************987 PP
4AP2431.1e-1310391088155
                  AP2    1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55  
                           s+y+GV+w+++++rW+++  ++  +   k++ +g+f  + eAa+a+++a ++l+g
  Vocar.0001s1269.1.p 1039 SQYRGVSWHERSQRWEVR--VW-GG--GKQHFIGSFTEEVEAARAYDRAVLRLRG 1088
                           78**************77..55.22..4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.19E-11651709No hitNo description
SuperFamilySSF541711.37E-10651709IPR016177DNA-binding domain
SMARTSM003809.8E-12652715IPR001471AP2/ERF domain
PROSITE profilePS5103214.684652709IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-12652709IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-9870927IPR016177DNA-binding domain
PfamPF008474.1E-5870911IPR001471AP2/ERF domain
SMARTSM003801.9E-4871932IPR001471AP2/ERF domain
PROSITE profilePS5103210.942871931IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-9871927IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-129531013IPR016177DNA-binding domain
CDDcd000181.56E-139531014No hitNo description
PfamPF008472.6E-59531004IPR001471AP2/ERF domain
SMARTSM003806.5E-129541018IPR001471AP2/ERF domain
PROSITE profilePS5103213.2749541012IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-139541014IPR001471AP2/ERF domain
CDDcd000181.25E-1010391102No hitNo description
SuperFamilySSF541712.62E-1110391101IPR016177DNA-binding domain
PfamPF008473.5E-610391088IPR001471AP2/ERF domain
SMARTSM003801.5E-1010401106IPR001471AP2/ERF domain
PROSITE profilePS5103214.43410401100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-1010401101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1704 aa     Download sequence    Send to blast
MERDSSHGSL QKEAGTTITG RNRLLVSIPG DAGPSGNVCE TPLDFQTPSF EQMGFGSLST  60
QANAQANQSA NDVLSPFGNG LSDLDLLISP LLANGNVAGF SGDGAVQGGP NCQAGGTAVA  120
AANAGAASGA TLFQQQQQQQ QSQLPHLPGG AGQGAGSSTN HAGGLSTGAP GAGVQQAAVG  180
AGNGEGGDAA AARKAMGPPS TISAQMQQKL GISHGGGAGA SGGTTPSGDG DKRSGRAGAL  240
PRPPPLTIPA DVPSSLITGI NTGTGFSPLP SILNSPFIEG LMSASPNAQL AAMFAQLAQS  300
TRGGQTPALL DALTPGTASG WPDSTRSGGG TLRQLLDLHD MGGLGLGEGD LDEGALADAL  360
LGKGFLEALP SARGVPHAGG SGGAGAQPGV GREMPNALAD DCDIAGGSGN GTGGGELSAE  420
QLASLGLQSP SALGVNGNGS VLYKGVHYDK EQNTWQVVVF DGSRYTVVGE YTNELEALVA  480
NELLSPAQPM PGNINTLLAG GSSDTDGQGS GGLVENALDT APPLESSGPN GVANLDAGGQ  540
AAAAPSVSGS RTPNLSDYLN RLTNNSSMMG GPALSPTAGL SPLFSALSPA GGGGFTALLL  600
PTPRDHASAG VGAHLLPSPT ALGRSGNLNS MSAAATGTGS GVGPGQAVPT SVFRGVVYRK  660
EQRRWAAVLE DGSSDDQWLG LFDSELEAAR VYDAEAFRRY GSKAELNFPS GSGNSPSPTA  720
PLGPGGVMDV ATAEAGFAAL HQHGALGLGL GTSLGTDASY DDEEEDDDDS ESGGMRPMSG  780
AGGFGRGRGR GRGRGRGRGR GRGRGRSRSG GGADDDDEDF VLGNASSRAE GPGTGRGRGR  840
GRGRGAALPP AALPIVPAPE IIGPDGKRES VYRGVVWDDK QNQWRAQIAE NGVTTVLGHF  900
ATQEDAARAF DTAVLRSGNK ELLNFPLLAK PATNPHPGPK ARGPRAPGTR VTSQYKGVSW  960
NSACSKWVAV LWDRELKRAR HIGSYESEED AARAYDKEAL RMLGPEAGLN FRESAADYLA  1020
EIGADGVPEG THNCNKGSSQ YRGVSWHERS QRWEVRVWGG GKQHFIGSFT EEVEAARAYD  1080
RAVLRLRGQD ARSRSRMNFP LSDYNLDELG VAGDPSVFLG LAVGMRSTPE PRGRKPGRRK  1140
RPRGDGDDSD SEEEPMVIRG HQNYGALAQA APAPPQQHQA ATNNAAPGAA ATASRAAQQQ  1200
LTAVLQAALK QGNLQLQLGT GQNASVGAAS AAAPGGPQGS AEGDPQARAL AALTAAAAAG  1260
GLVVPLPGVP GGAVVLGMLP QLAAGATAGK QTPQLSLELL ARHASALMTN KQHGMQGAPG  1320
SAGPQPSVSH NVLDAQQGVA EGQHLPGLGC NAGVGLVGAS SCSGSPLAAP VPHQQQQQEA  1380
ALRGGDQLHL QALNSGARVG VEEGKGSGLD VYGPAGAYLG APATHGAAAG NTSGAWQSGG  1440
HMVGGASGSF SNVGASDGAD QSLPSDTTGA GDSDAQGLVS RAGASHSANT GRGGQQQPGH  1500
FNMHEHGDIR PTSYGHHSLT SASGINPGSP VGTLASHLPS SGPQAIEQQV DHTFSAPSGD  1560
QAFAGSEHRT MLYGGAPRRR GDIWAGRGAF SGPPGDDNSE DDADDESEDD DSPVAKRYRW  1620
DGGPGVRGHN RYGLCTADRA APGPPGMEST CDLAVQGADC CGHSGVPAAA GAGLGEQVGQ  1680
NICQRCSPIR NAMRSLPARQ WPT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1797807RGRGRGRGRSR
2835844RGRGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002946570.10.0pathogenesis-related genes transcriptional activator
TrEMBLD8TJ870.0D8TJ87_VOLCA; Pathogenesis-related genes transcriptional activator
STRINGXP_002946570.10.0(Volvox carteri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP574088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-21AP2 family protein