PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vocar.0001s1150.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
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Family | Whirly | ||||||||
Protein Properties | Length: 227aa MW: 24085.7 Da PI: 10.0616 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 69.9 | 4.4e-22 | 68 | 210 | 2 | 137 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelana.......ta......erkydWekkqsfalsatevaelvd...laskesce 75 +ykt+aa+ v p+f++ g +l+r+G +lle+ana ta +r+y+W++k sfals+ e+++++ +as + Vocar.0001s1150.1.p 68 IYKTRAAMAVRLLPPSFTTE-NGYKTLERDGVMLLEFANAnpgqpsgTApaaggiNRTYNWSNKISFALSPSELGTMLAgdaIASDKGLV 156 9****************998.89999***********9974333333222233446*******************98744589******* PP Whirly 76 ffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 ++hdp++ ++ G+ k l ++ +pdG+ f +ls + +++s+Pvs++ef vl+sl Vocar.0001s1150.1.p 157 MYHDPTK-LGKVGEPMKRLTMKQMPDGAISF-SLS------AAPDNISLPVSRGEFEVLKSL 210 *****86.5678999************8544.444......45779*************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 1.5E-49 | 56 | 225 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 9.42E-21 | 60 | 224 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 1.1E-39 | 68 | 210 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MLCSAMLGKA SPTCGRVRVS QRAFSVAAQS LSQQLSAPVS KPNYSAPSPG PRALATSSTE 60 RVYVNFHIYK TRAAMAVRLL PPSFTTENGY KTLERDGVML LEFANANPGQ PSGTAPAAGG 120 INRTYNWSNK ISFALSPSEL GTMLAGDAIA SDKGLVMYHD PTKLGKVGEP MKRLTMKQMP 180 DGAISFSLSA APDNISLPVS RGEFEVLKSL AHYAIPRLLG FDAAFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1l3a_A | 3e-20 | 57 | 224 | 33 | 193 | p24: plant transcriptional regulator PBF-2 |
1l3a_B | 3e-20 | 57 | 224 | 33 | 193 | p24: plant transcriptional regulator PBF-2 |
1l3a_C | 3e-20 | 57 | 224 | 33 | 193 | p24: plant transcriptional regulator PBF-2 |
1l3a_D | 3e-20 | 57 | 224 | 33 | 193 | p24: plant transcriptional regulator PBF-2 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002946519.1 | 1e-116 | hypothetical protein VOLCADRAFT_86539 | ||||
TrEMBL | D8TIY3 | 1e-115 | D8TIY3_VOLCA; Uncharacterized protein | ||||
STRING | XP_002946519.1 | 1e-115 | (Volvox carteri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2026 | 15 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14410.1 | 1e-20 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Vocar.0001s1150.1.p |