PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0001s1117.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family NF-YC
Protein Properties Length: 393aa    MW: 39841.6 Da    PI: 5.5605
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0001s1117.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC163.72.5e-51321391101
                NF-YC   1 qlksfwekq....iekatd.......fknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdi 79 
                          qlk+fw++q         +       fknh+lPlarikki+k+dedv+misaeaPvl++kace+fileltlrsw+haeenkrrtl+++d+
  Vocar.0001s1117.1.p  32 QLKAFWQSQlievA----EvppdpavFKNHQLPLARIKKIMKSDEDVRMISAEAPVLFAKACEMFILELTLRSWMHAEENKRRTLQRNDV 117
                          79*******64432....212224449*************************************************************** PP

                NF-YC  80 aaavtrtdifdflvdivprdel 101
                          aaa+t+t+ifdfl+divprd+ 
  Vocar.0001s1117.1.p 118 AAAITKTEIFDFLLDIVPRDDS 139
                          *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.54E-3020130IPR009072Histone-fold
PfamPF008085.1E-2158121IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.7E-3759136IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGDSQVGFPG QFPGQFSAAY GMPQQSNHQA EQLKAFWQSQ LIEVAEVPPD PAVFKNHQLP  60
LARIKKIMKS DEDVRMISAE APVLFAKACE MFILELTLRS WMHAEENKRR TLQRNDVAAA  120
ITKTEIFDFL LDIVPRDDSK QDEAGGTTGP AGTTTPSAPP APPPAAAAAA QAAPTAMRPQ  180
GTITHPALGP GSLYFPTPYP IPPGALGGDP SQAAAAAAMM RPTLPPMGVD PALVSLYQQQ  240
LLSGQAWPHI SGLPPPPTAQ GAAAAAAAVA AQAQQQAAAA VVAAQAQQQA AAAAVAAQAQ  300
QQQAAAVAAA QAQQQAAAVA AVQAQQQAAA VAAAAAAGPT QTAGATAGSA NTQLQQQVQG  360
HGQGQQGSAA AATTPSSGHT DQQAAEQSEK NS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B6e-48541361395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108114RRTLQRN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A150G0921e-86A0A150G092_GONPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP21951616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-53nuclear factor Y, subunit C4