PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0001s0653.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

SBP

Protein Properties

Length: 1135aa MW: 122381 Da PI: 7.877

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0001s0653.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	74.8	1.5e-23	20	93	1	74
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT------- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrr 74 +C+v gC+++++ ++y+rrh +Ce h k+ +v+g++ rfCqqC+r h +s+fD ++rsCr rL++ n+rr Vocar.0001s0653.1.p 20 RCRVLGCDKEMALERKYYRRHMICEEHLKSLCLVVDGQRMRFCQQCARLHYISQFDGTQRSCRVRLKHRNKRRL 93 6***********************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.7E-23	18	82	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	22.623	18	95	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.68E-22	20	94	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-23	21	92	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1135 aa Download sequence Send to blast
MSTSEDSASH YGQGDALEGR CRVLGCDKEM ALERKYYRRH MICEEHLKSL CLVVDGQRMR 60 FCQQCARLHY ISQFDGTQRS CRVRLKHRNK RRLLQKRQRR EQQQGAAEGA GAAVDADTCD 120 PGEPDAGGGD GNGGGGNGGG GGTPPFSSRS RSSKVSFRSC RRRAPNDDDA FASVAAAAEA 180 GVKVIAALGV GEELSDCDDD DDGNGSSKQR RRKRAPAAVA AAAPRSFTGG GGGGGQRQRT 240 SNPTMDSFPH TPDPTTTATT PAAALPQRNV HVRLGLDGSG AGGAADGEGD DDEGSYTDTG 300 AGESWRDYES PAGPAPCRPT QAASVAGPAG STAGRLAAPQ QQLEGLLRPL QRFGGRVGGA 360 TATASAAPVI AGMEGRWAQN NSSNKAAAAA ADLLIQQRTG MLEHLRQQQQ QQQQQQAVAA 420 EATSLIAQRR LPPPPPPAAA QQTLRLSLLP DYPDVLVSAD DQHHHSRHLL SALDGVFSAS 480 ERQTLGGSLR LSHTGSVRNG VGGIAGLAPE LPLSLAVLSS TDRMLSLIEE ELSREGSGLS 540 WARTNDHVAA AAAAAAAALH HQQQQEEEEE RGARGSADRG AVNVIWRTQP QQHGPMAGTL 600 QWEGPDRREA FHTHQKRLHQ KQQQQQQMEF QLQAQPKQLS ISGPGHRVSG APEPRGEEPD 660 QRNTARTLAA PQPQRQQQEQ LQPQPHRHQL DAVVPVADGH LQAAPRLIGL PQTVQLRSSG 720 DGASGSGSGA GLLHNAAAAT AGSVAQQQAT QQQWPGENHT GEPPPLQQHQ QQQPLPLQLE 780 LQLQQQALHS QQHQHQHQHQ QQQQQHQQQQ RQQQEHQQQR HDMQPQTGLG AATMIRAPQL 840 QQQQQLQQQQ LTAIASASWE LELGSLPPKP HSQLTYAQRR CSSERTPYRL HNMPDCPPPH 900 LASATAATAA VDGLDSGPLA PSYSHENQYY QQQQQQQLQS RQSTLRQQHL QQQKLLLQLQ 960 QRQKQQQSHP HHQPHHQDQD QGSLRSDTVP REGAAHFPPQ VSLGTYSRLQ ANRAAGAAYG 1020 TPLAVRAAYG TGDTPSAPLP PQMGYAWQQR QQQQQQQHTL LVDPDETATA WRRRDVRHDA 1080 EVSAVPQPSP SPLSYSARNG QSWSLDAGRG GGGGSSSSDL YGRRPGDYTQ HSAC*

Sequence ? help Back to Top

Protein Sequence Length: 1135 aa Download sequence Send to blast

MSTSEDSASH YGQGDALEGR CRVLGCDKEM ALERKYYRRH MICEEHLKSL CLVVDGQRMR  60
FCQQCARLHY ISQFDGTQRS CRVRLKHRNK RRLLQKRQRR EQQQGAAEGA GAAVDADTCD  120
PGEPDAGGGD GNGGGGNGGG GGTPPFSSRS RSSKVSFRSC RRRAPNDDDA FASVAAAAEA  180
GVKVIAALGV GEELSDCDDD DDGNGSSKQR RRKRAPAAVA AAAPRSFTGG GGGGGQRQRT  240
SNPTMDSFPH TPDPTTTATT PAAALPQRNV HVRLGLDGSG AGGAADGEGD DDEGSYTDTG  300
AGESWRDYES PAGPAPCRPT QAASVAGPAG STAGRLAAPQ QQLEGLLRPL QRFGGRVGGA  360
TATASAAPVI AGMEGRWAQN NSSNKAAAAA ADLLIQQRTG MLEHLRQQQQ QQQQQQAVAA  420
EATSLIAQRR LPPPPPPAAA QQTLRLSLLP DYPDVLVSAD DQHHHSRHLL SALDGVFSAS  480
ERQTLGGSLR LSHTGSVRNG VGGIAGLAPE LPLSLAVLSS TDRMLSLIEE ELSREGSGLS  540
WARTNDHVAA AAAAAAAALH HQQQQEEEEE RGARGSADRG AVNVIWRTQP QQHGPMAGTL  600
QWEGPDRREA FHTHQKRLHQ KQQQQQQMEF QLQAQPKQLS ISGPGHRVSG APEPRGEEPD  660
QRNTARTLAA PQPQRQQQEQ LQPQPHRHQL DAVVPVADGH LQAAPRLIGL PQTVQLRSSG  720
DGASGSGSGA GLLHNAAAAT AGSVAQQQAT QQQWPGENHT GEPPPLQQHQ QQQPLPLQLE  780
LQLQQQALHS QQHQHQHQHQ QQQQQHQQQQ RQQQEHQQQR HDMQPQTGLG AATMIRAPQL  840
QQQQQLQQQQ LTAIASASWE LELGSLPPKP HSQLTYAQRR CSSERTPYRL HNMPDCPPPH  900
LASATAATAA VDGLDSGPLA PSYSHENQYY QQQQQQQLQS RQSTLRQQHL QQQKLLLQLQ  960
QRQKQQQSHP HHQPHHQDQD QGSLRSDTVP REGAAHFPPQ VSLGTYSRLQ ANRAAGAAYG  1020
TPLAVRAAYG TGDTPSAPLP PQMGYAWQQR QQQQQQQHTL LVDPDETATA WRRRDVRHDA  1080
EVSAVPQPSP SPLSYSARNG QSWSLDAGRG GGGGSSSSDL YGRRPGDYTQ HSAC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-11	21	92	11	82	squamosa promoter binding protein-like 4

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	99	RNKRRLLQKRQRR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	2e-18	SBP family protein

Link Out ? help Back to Top
Phytozome	Vocar.0001s0653.1.p