PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vocar.0001s0492.1.p

Organism

Volvox carteri

Taxonomic ID

3067

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox

Family

SBP

Protein Properties

Length: 2119aa MW: 213553 Da PI: 6.7928

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vocar.0001s0492.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	78.4	1.1e-24	66	142	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gC +dls k y +r+ vCe h ka v +++g+e rfCqqC +f +l+ef+ ++rsC r ++ n rrr ++ Vocar.0001s0492.1.p 66 TCQVDGCGKDLSGEKAYLQRYSVCEGHFKADVSFLHGQEVRFCQQCNKFQDLREFEGARRSCAARSKDRNLRRRMQT 142 6************************************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.5E-24	60	127	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	22.059	64	141	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.19E-22	66	141	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.2E-25	67	140	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2119 aa Download sequence Send to blast
MSSEGARGSS KAAWDSTAYS MDPYLGFARV QGADARKTGE ELRHASGHTD ITLLPKKSRK 60 ATRPSTCQVD GCGKDLSGEK AYLQRYSVCE GHFKADVSFL HGQEVRFCQQ CNKFQDLREF 120 EGARRSCAAR SKDRNLRRRM QTTLQKGSTA EELFAPEAIA LVTEQQHQHQ QQQQQQHQSG 180 SPGRSGGGQA GGGGSDDSGG GGGGRAGSGD ASMGGSAAFA RRRPQEVRGA SGGSEYSSEA 240 VGAAATLAVH SRAHPGGGHH HAVLGGGVPQ SRTLASSAAA APPPLMDSNP HQQLRRPTGS 300 GGNGGTSSSN PEAGGQEHLA GRGPTWMSTE KMGQSCDLDG GGGGGGANLP SHLAASLARR 360 SAASYMAVGN TGPGGGDGGP VPMQVDGFLS AASSKQYTPH GGGRQADGLL AAFEGDGGGA 420 ATSAAALREH DSAYAAKLSA TLGGPSSSSG GGGGGGGGGW AGPAALSLLD VFDNILPQQR 480 NQQQQPQQQH YPLGARQATP DLPPPQLQHQ RHSHSNSQQP PQPQQHQQVP AQRGGGTLLQ 540 HSSATGGSVM ASWGSGVGQR LQVLAAGGGS GAGGGGSGSG QYVGLHQQQR TLGGLALADD 600 DAAAALLEQL QGGGVGALAA AAREAGSLSG LLGPGGVRSG GGDIGGGGCG GGGTADGHTV 660 RAVLLQSQQQ QQPAGAMANL LSAASSSRHD DLSAMIKERR AALVRQQLLQ QQQQQRQQQQ 720 QQHHDHHNHH NQQQQHHLHG QLQGSDAGVL PLDQLTLLGQ PNGGGAFLLG LSHSEQAQLR 780 LLTAGGGGGG GNTAVLGEAA SAWAASSGLD DYYDVMPGYG MRGGGGGGGG VQGVLGGAGR 840 LLVSGGAGLG AAAGGSAAYG PAGELLGAAA RRYHVLGGPA LMTAQLLEQY ALGGGGGEDA 900 GPIDRPGFGG GGGGGGMNGL HGTGGRGLQQ HSAASRAGGG SSGDDGGGGG GRGFGRYDTG 960 DTAGAGFAPH GGGGGGGDRS NGPDGGGGGG GGGSSRLLSV LFPGAGGRED ALAARVCLKL 1020 FSCVPDDLPG DLLLRLRRWA TAADSDVVQI FMRPGCVHLI VNMRLSQGGQ ALLERSVLGG 1080 GDLDLAVTAL RGAFESSGLL RGRRVVVQAA EGPRGAFEYD GASGGQARWV ADADLARAPS 1140 VVMVQPAALT CGISTTVTLI GRNLHQHGTR FYARCGGKSY ELRPKVPPPS AAAAAAAAAA 1200 MMSLSTRYND ADLASPPEAA AAVATAAAAA AETPPLPPQL CRPAHVRSAP EPGRESWPDG 1260 MSTPSPISSV LGGGGGADGP QQLLYSELDG SLLPSPEAGL VPERFCVSAA ASPGLTLLAE 1320 ASKVSYSRQT SHQHAEDRST TAEAVAAAEE DDAAAAALVS PLPLDYCARG SVVCMQPSWC 1380 SELEVVHVEV PALPRHGLVA VEAINVSVDV IGTWAPGVVC HDPLAAEELN LWLRDSGDAF 1440 CGSWFLKELG VLLDYDAVMP SLLQGHAGLA GTGAWGRRPW EGSTAAPPPP GAAVGPSSPV 1500 AVRSGTSQRA LQHKHAAVHD NHSQQQHVQQ VRQPGAAQRV IPAMSNPLPR VATAEPGGMA 1560 AAAAAVRAGA LSAMPYTAAE CTDLPPILSA RPDGSLELRL LPSDPLVNGG GRAALTTVVQ 1620 SRASARPAQV PLAAATPRGA HGAAADLPYM SPGEPLDGGR LVPRRPLNPQ WPLSDDTKVP 1680 DAPGRLLGPS LPRLLSHPLL HAGCRRAMLS AGSRLLSFTV ASGLVVLANG LVEWMMALEA 1740 PSLGLAPGFD PTTDTFATIT TATASAPSHH HNHHHAVPDN TQPTTFSSPV GELFERVASR 1800 AAVATIRGAA NAAAACVRGP GGCSGGGGGG SGASTTTTTT TLAESSFRDG GSSSIESSLD 1860 SSCSRDGGFR NLNMGLTLLH LAVASCSSAM LMQVLDWAEE YGRPWAFDTR SWPGRITALH 1920 LAAAAAAAAA AAQHGGGGRG ADAARLLLSL GPEAQSAWLQ ARDGEGRTPA DIARAAGLDE 1980 LNYFCVYGEE APEAAPKELL LEEASETKMA TVGDDGGDSC VDIDSDANTR VAAAEMGTGP 2040 AAAVAAAGAS SHGGLSAGLD PRAPLQHVQV PQPPLPLPPP PPPPPILPRR LPANPFGWLL 2100 LLGALVVMLL ASALRMWP*

Sequence ? help Back to Top

Protein Sequence Length: 2119 aa Download sequence Send to blast

MSSEGARGSS KAAWDSTAYS MDPYLGFARV QGADARKTGE ELRHASGHTD ITLLPKKSRK  60
ATRPSTCQVD GCGKDLSGEK AYLQRYSVCE GHFKADVSFL HGQEVRFCQQ CNKFQDLREF  120
EGARRSCAAR SKDRNLRRRM QTTLQKGSTA EELFAPEAIA LVTEQQHQHQ QQQQQQHQSG  180
SPGRSGGGQA GGGGSDDSGG GGGGRAGSGD ASMGGSAAFA RRRPQEVRGA SGGSEYSSEA  240
VGAAATLAVH SRAHPGGGHH HAVLGGGVPQ SRTLASSAAA APPPLMDSNP HQQLRRPTGS  300
GGNGGTSSSN PEAGGQEHLA GRGPTWMSTE KMGQSCDLDG GGGGGGANLP SHLAASLARR  360
SAASYMAVGN TGPGGGDGGP VPMQVDGFLS AASSKQYTPH GGGRQADGLL AAFEGDGGGA  420
ATSAAALREH DSAYAAKLSA TLGGPSSSSG GGGGGGGGGW AGPAALSLLD VFDNILPQQR  480
NQQQQPQQQH YPLGARQATP DLPPPQLQHQ RHSHSNSQQP PQPQQHQQVP AQRGGGTLLQ  540
HSSATGGSVM ASWGSGVGQR LQVLAAGGGS GAGGGGSGSG QYVGLHQQQR TLGGLALADD  600
DAAAALLEQL QGGGVGALAA AAREAGSLSG LLGPGGVRSG GGDIGGGGCG GGGTADGHTV  660
RAVLLQSQQQ QQPAGAMANL LSAASSSRHD DLSAMIKERR AALVRQQLLQ QQQQQRQQQQ  720
QQHHDHHNHH NQQQQHHLHG QLQGSDAGVL PLDQLTLLGQ PNGGGAFLLG LSHSEQAQLR  780
LLTAGGGGGG GNTAVLGEAA SAWAASSGLD DYYDVMPGYG MRGGGGGGGG VQGVLGGAGR  840
LLVSGGAGLG AAAGGSAAYG PAGELLGAAA RRYHVLGGPA LMTAQLLEQY ALGGGGGEDA  900
GPIDRPGFGG GGGGGGMNGL HGTGGRGLQQ HSAASRAGGG SSGDDGGGGG GRGFGRYDTG  960
DTAGAGFAPH GGGGGGGDRS NGPDGGGGGG GGGSSRLLSV LFPGAGGRED ALAARVCLKL  1020
FSCVPDDLPG DLLLRLRRWA TAADSDVVQI FMRPGCVHLI VNMRLSQGGQ ALLERSVLGG  1080
GDLDLAVTAL RGAFESSGLL RGRRVVVQAA EGPRGAFEYD GASGGQARWV ADADLARAPS  1140
VVMVQPAALT CGISTTVTLI GRNLHQHGTR FYARCGGKSY ELRPKVPPPS AAAAAAAAAA  1200
MMSLSTRYND ADLASPPEAA AAVATAAAAA AETPPLPPQL CRPAHVRSAP EPGRESWPDG  1260
MSTPSPISSV LGGGGGADGP QQLLYSELDG SLLPSPEAGL VPERFCVSAA ASPGLTLLAE  1320
ASKVSYSRQT SHQHAEDRST TAEAVAAAEE DDAAAAALVS PLPLDYCARG SVVCMQPSWC  1380
SELEVVHVEV PALPRHGLVA VEAINVSVDV IGTWAPGVVC HDPLAAEELN LWLRDSGDAF  1440
CGSWFLKELG VLLDYDAVMP SLLQGHAGLA GTGAWGRRPW EGSTAAPPPP GAAVGPSSPV  1500
AVRSGTSQRA LQHKHAAVHD NHSQQQHVQQ VRQPGAAQRV IPAMSNPLPR VATAEPGGMA  1560
AAAAAVRAGA LSAMPYTAAE CTDLPPILSA RPDGSLELRL LPSDPLVNGG GRAALTTVVQ  1620
SRASARPAQV PLAAATPRGA HGAAADLPYM SPGEPLDGGR LVPRRPLNPQ WPLSDDTKVP  1680
DAPGRLLGPS LPRLLSHPLL HAGCRRAMLS AGSRLLSFTV ASGLVVLANG LVEWMMALEA  1740
PSLGLAPGFD PTTDTFATIT TATASAPSHH HNHHHAVPDN TQPTTFSSPV GELFERVASR  1800
AAVATIRGAA NAAAACVRGP GGCSGGGGGG SGASTTTTTT TLAESSFRDG GSSSIESSLD  1860
SSCSRDGGFR NLNMGLTLLH LAVASCSSAM LMQVLDWAEE YGRPWAFDTR SWPGRITALH  1920
LAAAAAAAAA AAQHGGGGRG ADAARLLLSL GPEAQSAWLQ ARDGEGRTPA DIARAAGLDE  1980
LNYFCVYGEE APEAAPKELL LEEASETKMA TVGDDGGDSC VDIDSDANTR VAAAEMGTGP  2040
AAAVAAAGAS SHGGLSAGLD PRAPLQHVQV PQPPLPLPPP PPPPPILPRR LPANPFGWLL  2100
LLGALVVMLL ASALRMWP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-17	67	139	11	83	squamosa promoter binding protein-like 4

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	132	138	DRNLRRR

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP11311	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	2e-18	squamosa promoter binding protein-like 4

Link Out ? help Back to Top
Phytozome	Vocar.0001s0492.1.p