PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vocar.0001s0192.1.p
Organism
Volvox carteri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Volvocaceae; Volvox
Family E2F/DP
Protein Properties Length: 787aa    MW: 87083.1 Da    PI: 7.2551
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vocar.0001s0192.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP57.22.8e-182197271
              E2F_TDP  2 keksLrlltqkflklleksee.givtlnevakeLvse.........dvknkrRRiYDilNVLealnliekkekneirwkg 71
                         +  +Lrl++ k   ++ek ++  ++t+n va+eLvs+         d k +rRR YD++NVL a +li k +k++i w+g
  Vocar.0001s0192.1.p 21 SAGGLRLFSLK---VVEKIRSrVRTTYNAVANELVSDqnmsggnarDGKSIRRRCYDAINVLLACGLIMKDDKKQIVWRG 97
                         6789*******...8899777799**********************9999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.6E-241798IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.5E-202097IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.16E-122398IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.4E-172397IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011382.6E-6101266IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440745.75E-15102227No hitNo description
PfamPF087811.1E-7102236IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MDSDSRGRRG RARNSRGSSR SAGGLRLFSL KVVEKIRSRV RTTYNAVANE LVSDQNMSGG  60
NARDGKSIRR RCYDAINVLL ACGLIMKDDK KQIVWRGHGC VELDRLRAEV EKKAQDVEQK  120
KKLLQDMERK HKTLEALLAL GASREADAQD SGCGSGGSSS ACSGSSQTSQ RYTIPFMLVQ  180
APACAKVHLH SSEDRTEVQF ELTEAPPELH DDCSVVMRLQ QHEAERQANQ RCRRQQQQRG  240
VGPSQATDSG QPTPPQQPAA AGAAGAAGPM ACDFSTPETL VQLPGPATSA ALPLLPPLQH  300
LLLRQSSQQP HLPQPQPQQR FQDPVAPPLP HNFTQPPQQG QQHQQQPSEM APQQQQQQPQ  360
QQLEQSLPVA LPNHLLVPGA QPSHSIHEDR LTSALQHPLE AAPQQPPQQQ PQQQQQQQSI  420
DFLSHLKPLV TSRTQKDSKD WRRPPHAVRD MQVDDQAQAG RPLEVHPAGA TGRAWQQVGP  480
APAVVQPPPQ PLSLLSQPLS QSHLHPHSQP PHQPQHQHQQ QVAFAAAAPP PPTTGDLAHF  540
FCSRSLEQQL QTQHPCTPFG AHDCYQHHNH HDEHRHQHQH QQHNRHLGGL GQLQTQPSLG  600
ALEHGRHQHH LHQQHQSIHQ QQQQQQHPLV KQEQQPLQSL QEHQQSIPPQ VHPMQVLLQH  660
PPPPQQQQQQ DLQPHEPQPP QDLGLGELLA PASPPSLYTL EQMDDEHHLP SGLMPFTSED  720
PDPLSLGIGS NLVLDQLGYM GWPCSGSPDP FSPSAFLVTP SFMKGPCRSE QNRSVGAVHQ  780
HMSVQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B8e-161597288PROTEIN (TRANSCRIPTION FACTOR DP-2)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP15991417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.12e-23Transcription factor DP