PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang2009s00010.1 | ||||||||
Common Name | LR48_Vigan55s000300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 168aa MW: 19531.2 Da PI: 8.9319 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.2 | 2.9e-05 | 3 | 22 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F r n++ H+ Vang2009s00010.1 3 FSCSICSKTFIRYNNMQLHM 22 89*****************9 PP | |||||||
2 | zf-C2H2 | 18.6 | 5.1e-06 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +t+ Vang2009s00010.1 87 FMCRKCGKTFAVKGDWRSHEKTC 109 89******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.66E-5 | 2 | 28 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.8E-5 | 3 | 25 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.533 | 3 | 30 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 3 | 25 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 5 | 25 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 120 | 50 | 82 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.6E-7 | 73 | 108 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.47E-7 | 73 | 108 | No hit | No description |
SMART | SM00355 | 35 | 87 | 107 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.891 | 87 | 108 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MQFSCSICSK TFIRYNNMQL HMWSHGSEFR KETHALKGTQ STTMLRLPCY CCAHGCEYNI 60 NNPTAKPLKD FRTLQRHYKR RHGTKPFMCR KCGKTFAVKG DWRSHEKTCG KLWYCTCDSY 120 FKNQRSLNKD HIRSFGKGHN PHPPFEALED EKECITGSDE DEINAHA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang2009s00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. | |||
GenBank | AP015057 | 0.0 | AP015057.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0013, complete sequence, cultivar: Shumari. | |||
GenBank | AP015207 | 0.0 | AP015207.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0163, complete sequence, cultivar: Shumari. | |||
GenBank | AP015435 | 0.0 | AP015435.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0391, complete sequence, cultivar: Shumari. | |||
GenBank | AP015592 | 0.0 | AP015592.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0548, complete sequence, cultivar: Shumari. | |||
GenBank | AP015760 | 0.0 | AP015760.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0716, complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017411645.1 | 1e-125 | PREDICTED: zinc finger protein WIP3-like | ||||
Refseq | XP_017442996.1 | 1e-124 | PREDICTED: zinc finger protein WIP3-like | ||||
Swissprot | Q9SGD1 | 5e-80 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A0L9T3R5 | 1e-123 | A0A0L9T3R5_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA12G09400.1 | 1e-100 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 2e-82 | WIP domain protein 3 |
Publications ? help Back to Top | |||
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