PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang1922s00010.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 216aa    MW: 22845.6 Da    PI: 4.953
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang1922s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-184898155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      + y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a+++l+g
  Vang1922s00010.1 48 PVYRGVRRRS-SGKWVSEIREPR----KpNRIWLGTFATPEMAAIAYDVAALALKG 98
                      68*****888.8*********94....478***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-114898IPR001471AP2/ERF domain
SMARTSM003806.3E-3349112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-3049108IPR001471AP2/ERF domain
PROSITE profilePS5103222.47149106IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2149108IPR016177DNA-binding domain
CDDcd000184.70E-3150108No hitNo description
PRINTSPR003674.8E-115061IPR001471AP2/ERF domain
PRINTSPR003674.8E-1188108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
LPTAIIQVLP PSPQISLSLH ITTMRSSNGT TCAASSTGAS NGNTGRHPVY RGVRRRSSGK  60
WVSEIREPRK PNRIWLGTFA TPEMAAIAYD VAALALKGKD AELNFPDSAS SLPVPASSAA  120
RDIQMAAASA AAAVGAANDA LSEGSRGGNL SVSMAQEFPG GNLNHFVDDD LIFDMPNILV  180
NMAEGMLLSP PRFDNFSATD YDYMDENPNL WGFPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-15471061272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang1922s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411757.11e-139PREDICTED: ethylene-responsive transcription factor ERF024
SwissprotQ9SJR06e-57ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0S3RZ271e-138A0A0S3RZ27_PHAAN; Uncharacterized protein
STRINGXP_007162859.11e-115(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.13e-40ERF family protein