PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang1570s00010.1 | ||||||||
Common Name | LR48_Vigan06g042200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 219aa MW: 25186.2 Da PI: 7.6209 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3.2e-19 | 56 | 110 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++++++eq++ Le+ F +++++ e++ +LA +lgL+ rqV vWFqNrRa++k+ Vang1570s00010.1 56 RKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKN 110 45589************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 114.9 | 4.8e-37 | 55 | 147 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ++kr+ls+eqv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk++++a e++rLe+ev +L+++l+e Vang1570s00010.1 55 NRKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSHLKKSHEANLLEKCRLETEVLKLKDQLSE 147 58****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.103 | 51 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.7E-17 | 54 | 115 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-16 | 56 | 110 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.12E-18 | 56 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.47E-15 | 56 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 58 | 118 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.6E-5 | 82 | 91 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.6E-5 | 91 | 107 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MNHRPFQDNM MFIPQLYPAD APYTQIIAQQ GESKKPKRRR GKKNKGGENG ASEANRKRKL 60 SAEQVNLLEQ NFGNEHKLES ERKDRLALEL GLDPRQVAVW FQNRRARWKN KKLEEEYSHL 120 KKSHEANLLE KCRLETEVLK LKDQLSEAEK EIQRLLESGD RVPSNSSSSS QSQSQSQSME 180 AVDPAFFGVF GVDGYDDDVF YGPETHCINA LEWINLYM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 42 | PKRRRGKK |
2 | 37 | 58 | RRRGKKNKGGENGASEANRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang1570s00010.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426828.1 | 1e-162 | PREDICTED: homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 2e-69 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A0L9UQY2 | 1e-161 | A0A0L9UQY2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T4D0 | 1e-161 | A0A0S3T4D0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007156908.1 | 1e-123 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 6e-57 | homeobox protein 40 |
Publications ? help Back to Top | |||
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