PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang1339s00010.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 335aa    MW: 37471.4 Da    PI: 4.5374
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang1339s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.7e-102582981055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Vang1339s00010.1 258 SKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVNYVKFLQ 298
                       59*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.745248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-9254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-12257312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-7259298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-11259307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.28E-11259302No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEPVGAFPDG EWDCFRRMFG IEDHEHDFTQ EFPLLLGGGD ELNIVTQHAN FCAAPEAVEN  60
ELMFYSLDAH NNSNSSQYIS QESSYSNSSN CSGDDTVFIA NPGSSNYYFC YPDHMLADNA  120
CVYSLDEKHF APFAPSLANI ATQESVKLYE DLASDRLESF ECNQIEPVVF PSKRRLDVPA  180
EGKINNRSEN HKKKARVLKD VQGCMKNNTC SKKNQKHDSN REDAEETNAG SDGQSSSSNM  240
SEDDNKENIG GATSESKSKR RERINERLRI LQNLVPNGTK VDISTMLEEA VNYVKFLQLQ  300
IKLLSSDDLW MYAPLAYNGL DIGINLNMKN SLPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang1339s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503403.10.0transcription factor bHLH84
TrEMBLA0A1S3UBJ30.0A0A1S3UBJ3_VIGRR; transcription factor bHLH84
STRINGXP_007160904.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.12e-29root hair defective 6-like 4