PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang1262s00010.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 275aa    MW: 30013.6 Da    PI: 9.7039
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang1262s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.93.9e-21161211256
               AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae Aa+a+++a+++++g+
  Vang1262s00010.1 161 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAARAYDEAALRFRGN 211
                       8********.**********66.....56*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-33160219IPR001471AP2/ERF domain
CDDcd000185.35E-23161220No hitNo description
PROSITE profilePS5103225.686161218IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-23161219IPR016177DNA-binding domain
PfamPF008471.3E-14161210IPR001471AP2/ERF domain
SMARTSM003801.0E-36161224IPR001471AP2/ERF domain
PRINTSPR003675.6E-12162173IPR001471AP2/ERF domain
PRINTSPR003675.6E-12184200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAAPANTLDL SIVANPREKN EVDKNEGGMM NTHALSRLFP GLNREREMSA MVSALTHVVT  60
GEVPTSTDSA FLHDNHAVTP HVPSSASITP SLSSSSNYVL GTSSHKRARE QDAPCFSQTS  120
SMPRSGEFSN NSRSRITREM GNAVYEYKTT ENVRGDEERR KYRGVRQRPW GKWAAEIRDP  180
FKAARVWLGT FDTAEAAARA YDEAALRFRG NKAKLNFPEN VTLRQPQFSV SNSSTSLVSI  240
STSTDPAVHT PSFLPSQAII APSLLSVIAL SIPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-23160221466ATERF1
3gcc_A6e-23160221466ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang1262s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421576.11e-169PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A0L9UD351e-168A0A0L9UD35_PHAAN; Uncharacterized protein
STRINGXP_007137573.11e-121(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.12e-22related to AP2 6