PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang1236s00010.1 | ||||||||
Common Name | LR48_Vigan05g081300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 168aa MW: 18921.2 Da PI: 7.0022 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 67 | 88 | 1 | 22 |
EEETTTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt 22 y+C+ C k F++ L H+++ Vang1236s00010.1 67 YTCSFCRKEFKSAQALGGHMNR 88 9***************999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.4E-5 | 67 | 86 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MKRNNFMKDY THTCANNNPS KDFTHVVNCY NNKQNQMAKD LWECSTNSHS NADQDYVNGF 60 PWPPRSYTCS FCRKEFKSAQ ALGGHMNRWV LVDGILLNPL STNTPEPAKS KISESLSAGA 120 GEYDHAFARE DGCTVLKKGE ILRMDLEIGL PRTYDLDLEL RLGTTYS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang1236s00010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-144 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017424683.1 | 8e-61 | PREDICTED: transcriptional regulator SUPERMAN-like | ||||
TrEMBL | A0A0L9UKX1 | 2e-59 | A0A0L9UKX1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007149575.1 | 8e-52 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2843 | 31 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 6e-17 | C2H2 family protein |
Publications ? help Back to Top | |||
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