PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g18650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 723aa    MW: 81330.6 Da    PI: 7.9634
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g18650.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS409.82.5e-1251815494374
            GRAS   4 lLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +L  cA+avs++d   a+  + + l +++s +gdp+qRl ay++e+L+arl +s++ +yk+l++++ +   s+e l++++++++++P+ kf+++ 
  Vang11g18650.1 181 VLRVCAQAVSDEDVPTARGWMDNvLGKMVSVSGDPIQRLGAYLLEGLRARLESSGHLIYKSLKCEQPT---SKELLSYMHILYQICPYWKFAYIS 272
                     6788***************997627888***************************************9...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN  I ea+++e+r+Hi Df+i qG+QW  L+qaLa Rp+gppslR+Tgv++++s   +   le +gerL++fA+++gvpfef++ +a +  ++ 
  Vang11g18650.1 273 ANAVITEAMANESRIHIMDFQIAQGTQWYLLIQALAHRPGGPPSLRVTGVDDSHSIqaRGGGLEIVGERLSEFARSCGVPFEFHT-AAMSGCEVV 366
                     ****************************************************7777888899***********************.677777777 PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                       +++++pgEalaVn+ + lh++ desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F+ rfle+l+yy+a+f+s+++  pr++++r++ 
  Vang11g18650.1 367 RGSIEIRPGEALAVNFPFVLHHMADESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFYRFLETLDYYTAMFESIDVACPRDDQKRVSA 461
                     99********************************************************************************************* PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+++++r+ivn++acegaer+erhe l+kWr+rl++aGFk+ +ls+++    + ll+ ++++ yr+e+++++l+lgW++r + + SaWr
  Vang11g18650.1 462 EQHCVARDIVNMIACEGAERVERHELLGKWRSRLSMAGFKQCQLSSSVIVATQNLLNDFSQN-YRLEHKDDALYLGWMNRHMATSSAWR 549
                     ************************************************************66.*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.311152530IPR005202Transcription factor GRAS
PfamPF035148.7E-123181549IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MQTSQKHASS AGVHFYRHQP VQGIYHVLQS DLCHDARHSS SQETSFSFES CKEQYFTLES  60
CPAPTTGFTE CDDSPSYASV SSKRSPFSPQ GSHSCYSDHH QSSDNTYGSP ISGLSSVDDG  120
HELKHKLREL EISLLGPDES DIEDSFGCCV KGSRLDGASQ LAKHNWEQIA ENISRFDLKG  180
VLRVCAQAVS DEDVPTARGW MDNVLGKMVS VSGDPIQRLG AYLLEGLRAR LESSGHLIYK  240
SLKCEQPTSK ELLSYMHILY QICPYWKFAY ISANAVITEA MANESRIHIM DFQIAQGTQW  300
YLLIQALAHR PGGPPSLRVT GVDDSHSIQA RGGGLEIVGE RLSEFARSCG VPFEFHTAAM  360
SGCEVVRGSI EIRPGEALAV NFPFVLHHMA DESVSTENHR DRLLRLVKSL SPKVVTLVEQ  420
ESNTNTSPFF YRFLETLDYY TAMFESIDVA CPRDDQKRVS AEQHCVARDI VNMIACEGAE  480
RVERHELLGK WRSRLSMAGF KQCQLSSSVI VATQNLLNDF SQNYRLEHKD DALYLGWMNR  540
HMATSSAWRM EREEERERRR LRDRQRRQSM TKEQRERHLA RRRRNYQLRR QRAANTPLPP  600
LPQSTSSQPS VTTAGHLRSL PPSIPSQNTL QIIQDTMMNN GASIQMEGFP KRLSVVKRLA  660
RNFGNTKSVM TLDSYHVAPH FISGNSGTTN ILRLNSVKRL ARSLSFPVEK QPSRNIDTVT  720
NS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-5421254936375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1555565RERRRLRDRQR
2557564RRRLRDRQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g18650.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411723.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_017411731.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A0L9TU400.0A0A0L9TU40_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R9M20.0A0A0S3R9M2_PHAAN; Uncharacterized protein
STRINGXP_007154029.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13