PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g17430.1 | ||||||||
Common Name | LR48_Vigan01g309200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 312aa MW: 34755.9 Da PI: 4.881 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 7.1e-18 | 48 | 96 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g Vang11g17430.1 48 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 96 56******.**********965...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.4E-32 | 47 | 110 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.94E-28 | 47 | 103 | No hit | No description |
PROSITE profile | PS51032 | 20.547 | 47 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-28 | 48 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 48 | 59 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-20 | 48 | 105 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-11 | 50 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MSTSRTSDTP FKGYDPNQTQ MCLSLLQRNT SPSGERRGRR KQAEPGRFLG VRRRPWGRYA 60 AEIRDPTTKE RHWLGTFDTA QEAALAYDRA ALSMKGNQAR TNFVYSDNIN FHTILSPADV 120 QVQLQPNNQN SLPKVVHTSN TGNPSPLNND AFVEIETTYG SADQDDSFFF SSDSNSGYLE 180 CIVPDNCFRP ASSRTNSSNS RKSNVSDQKA NTNSSESTNH HEQYYYSQEM AVMSQGSWDD 240 QQSWDWNCSE LSAIFKNPLR VENGCMDALY PMSDDQSPSP SYGVMNECAS STTCSPSLPP 300 FGDVDLGYPL F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 38 | 110 | 5 | 78 | Ethylene-responsive transcription factor ERF096 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g17430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017434399.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF086-like | ||||
TrEMBL | A0A0L9TSR3 | 0.0 | A0A0L9TSR3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R922 | 0.0 | A0A0S3R922_PHAAN; Uncharacterized protein | ||||
STRING | XP_007154243.1 | 1e-177 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 2e-52 | ERF family protein |
Publications ? help Back to Top | |||
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