PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g17410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C3H | ||||||||
Protein Properties | Length: 540aa MW: 57048.9 Da PI: 8.075 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.4 | 9e-12 | 86 | 111 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG rC+F+H++ Vang11g17410.1 86 DEADCIYYLRTGFCGYGTRCRFNHPR 111 6799********************96 PP | |||||||
2 | zf-CCCH | 37.7 | 3.3e-12 | 148 | 172 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ Vang11g17410.1 148 QPVCQYYMRTGSCKFGASCKYHHPR 172 689********************96 PP | |||||||
3 | zf-CCCH | 34.9 | 2.6e-11 | 194 | 218 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ Vang11g17410.1 194 EKECSYYVKTGQCKFGATCKFHHPQ 218 679********************97 PP | |||||||
4 | zf-CCCH | 37.5 | 3.8e-12 | 359 | 384 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++C+++H+p Vang11g17410.1 359 DQPECHYYMKTGECKFGPSCRYHHPP 384 689*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.2E-4 | 84 | 111 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.854 | 84 | 112 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-9 | 86 | 111 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-6 | 87 | 113 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-5 | 90 | 111 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.779 | 145 | 173 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.6E-7 | 145 | 172 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-10 | 148 | 172 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 148 | 173 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-5 | 150 | 172 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.324 | 191 | 219 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 192 | 219 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-5 | 193 | 218 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-9 | 194 | 218 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 197 | 217 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.577 | 357 | 385 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 357 | 384 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 359 | 384 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-6 | 360 | 385 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-4 | 363 | 383 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MERYGRASEG SQSDPSPEWT VAGADAGIEG DSIYIICYSF HDSRFALNNA ECGNNGSRFD 60 LDFANNAESS WQHGLAAAES YPLRPDEADC IYYLRTGFCG YGTRCRFNHP RDRAACVSPI 120 SPLILALCSS VIGAAARTGG EFPERVGQPV CQYYMRTGSC KFGASCKYHH PRQAAGNATP 180 VPLNYYGYPL RVGEKECSYY VKTGQCKFGA TCKFHHPQPA GVQVIAPSPV PAVSHLPVPV 240 PSPVYPTVQP QSGPSQQQYG VLVARPPMLP GSVVQGPYGP MVVSPAMVPF SGWGPYQAPA 300 TTPVMPSSSA SNVGSTQLYG ITPLPSSAAT FTGPYQPSGS SVGPSGAIQK EHPFPERPDQ 360 PECHYYMKTG ECKFGPSCRY HHPPDKGAPK ANVILSPVGL PLRPNRIHVG LYIMHSCWTT 420 LYNIHYKCAS GSFFRFSYSP SASSLADMPV APYPVGSSIG TLAPSSSSSE LRPELGAGVS 480 KESVSSRMSS MSTSTGSVGL TLSSVGPISH SSTQPSAQSS SSSATTSATT SSTVSHTSS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g17410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014510178.1 | 0.0 | zinc finger CCCH domain-containing protein 34 | ||||
TrEMBL | A0A0L9TSM4 | 0.0 | A0A0L9TSM4_PHAAN; Uncharacterized protein | ||||
STRING | XP_007154244.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-120 | C3H family protein |