PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g17360.2
Common NameLR48_Vigan01g308200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YB
Protein Properties Length: 110aa    MW: 12524.2 Da    PI: 7.1892
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g17360.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1634.3e-51291897
           NF-YB  8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                    lPianv+rimk++lP nakisk++ket+qecvsefisfvtseas+kc++e+rkt+ngdd++wal++lGf+dy++pl+ yl++yrele ++
  Vang11g17360.2  2 LPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYADPLRRYLHRYRELEVDR 91
                    9**************************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.6E-481105IPR009072Histone-fold
SuperFamilySSF471131.43E-371106IPR009072Histone-fold
PfamPF008082.5E-27265IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.9E-182947No hitNo description
PROSITE patternPS0068503248IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.9E-184866No hitNo description
PRINTSPR006152.9E-186785No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
LLPIANVGRI MKQILPPNAK ISKESKETMQ ECVSEFISFV TSEASEKCRK ERRKTVNGDD  60
ICWALGSLGF DDYADPLRRY LHRYRELEVD RSAIQERGNS PSKDKDAEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-41286892Transcription factor HapC (Eurofung)
4g92_B3e-41286892Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g17360.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419994.11e-76PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822483e-51NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0L9TSQ63e-75A0A0L9TSQ6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R9T83e-75A0A0S3R9T8_PHAAN; Uncharacterized protein
STRINGXP_007154257.11e-73(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-45nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]