PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g16990.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 184aa    MW: 21384.7 Da    PI: 9.2103
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g16990.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.44.5e-242876149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ie +sn+qvtfskRr+g++KKA+EL++LC++++a+i+fs+  kl+ +
  Vang11g16990.1 28 KKIEKSSNKQVTFSKRRTGLFKKASELCILCNVNIAIIVFSPAEKLFCF 76
                    68*******************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-322079IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.5952080IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.02E-272192IPR002100Transcription factor, MADS-box
CDDcd002659.28E-352193No hitNo description
PRINTSPR004049.8E-212242IPR002100Transcription factor, MADS-box
PfamPF003191.0E-232976IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-214257IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-215778IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MNNQNFPSDI DAFKQQKKKA GRQKIEIKKI EKSSNKQVTF SKRRTGLFKK ASELCILCNV  60
NIAIIVFSPA EKLFCFGHPD FEGIVESYLK GSKVFDPPES RERSVSYEVC NKQYEEAMKK  120
LELEKKNLRE TETLVNKGCN RRWWEDPIDQ MSQSELEQFM VSVYELRRKL AERGGELLMQ  180
SMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A5e-1821113190Myocyte-specific enhancer factor 2A
3kov_B5e-1821113190Myocyte-specific enhancer factor 2A
3kov_I5e-1821113190Myocyte-specific enhancer factor 2A
3kov_J5e-1821113190Myocyte-specific enhancer factor 2A
3p57_A5e-1821113190Myocyte-specific enhancer factor 2A
3p57_B5e-1821113190Myocyte-specific enhancer factor 2A
3p57_C5e-1821113190Myocyte-specific enhancer factor 2A
3p57_D5e-1821113190Myocyte-specific enhancer factor 2A
3p57_I5e-1821113190Myocyte-specific enhancer factor 2A
3p57_J5e-1821113190Myocyte-specific enhancer factor 2A
5f28_A6e-1821113291MEF2C
5f28_B6e-1821113291MEF2C
5f28_C6e-1821113291MEF2C
5f28_D6e-1821113291MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g16990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506740.11e-118agamous-like MADS-box protein AGL62
TrEMBLA0A1S3UL671e-117A0A1S3UL67_VIGRR; agamous-like MADS-box protein AGL62
STRINGXP_007154305.13e-97(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-28AGAMOUS-like 62