PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g15490.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 134aa    MW: 15464 Da    PI: 5.3745
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g15490.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.29.2e-131302049
                    HHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF 20 ilKKAeELSvLCdaevaviifsstgklyey 49
                    ++KKA+EL++LC++++a+i+fs+  kl+ +
  Vang11g15490.2  1 LFKKASELCILCNVNIAIIVFSPAEKLFCF 30
                    8*************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.14E-13144IPR002100Transcription factor, MADS-box
SMARTSM004320.0024133IPR002100Transcription factor, MADS-box
PfamPF003197.6E-12130IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.068134IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
LFKKASELCI LCNVNIAIIV FSPAEKLFCF GHPDVEGIVG RYLKGEKVLV ASERRGSYEE  60
SNMQYEEAVK NLALEKKNLI ETEKMVKGLS RRWWEDPIDE TSERELEQFM VSLYELRKKL  120
TERAAQLFML SIQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g15490.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017410342.19e-94PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A4D6KZH44e-86A0A4D6KZH4_VIGUN; MADS-box transcription factor
STRINGXP_007154693.13e-81(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-25AGAMOUS-like 62