PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g15280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 27883.4 Da PI: 4.9553 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.8 | 4.6e-14 | 63 | 106 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A+eYI++L+ Vang11g15280.1 63 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQHLH 106 57*********************66......*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.72E-18 | 56 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.494 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.40E-14 | 59 | 110 | No hit | No description |
SMART | SM00353 | 1.8E-15 | 62 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.3E-17 | 62 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-11 | 63 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
LSVTTSNFPT MENMGGEYNH FWDTFFQNQE LDSWAMDEAA MSGYYDSSSP DGGASSMASK 60 NIVSERNRRK KLNERLFALR AVVPNISKMD KASIIKDAIE YIQHLHEQEK RIEAEILDLE 120 SGKLKNPTYE FDHDLPILLR SKKKRTEQLF DSATSRNSPI EVIELRVAYM GDKTFVVSLT 180 CSKRIDTMVK LCQVFESLKL KIIAANITSF SGTLLKTVFI EADEEEKDVF ADKNSDSNFS 240 SEWSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-13 | 61 | 121 | 9 | 69 | Transcription factor MYC2 |
5gnj_B | 1e-13 | 61 | 121 | 9 | 69 | Transcription factor MYC2 |
5gnj_E | 1e-13 | 61 | 121 | 9 | 69 | Transcription factor MYC2 |
5gnj_F | 1e-13 | 61 | 121 | 9 | 69 | Transcription factor MYC2 |
5gnj_G | 1e-13 | 61 | 121 | 9 | 69 | Transcription factor MYC2 |
5gnj_I | 1e-13 | 61 | 121 | 9 | 69 | Transcription factor MYC2 |
5gnj_M | 1e-13 | 61 | 121 | 9 | 69 | Transcription factor MYC2 |
5gnj_N | 1e-13 | 61 | 121 | 9 | 69 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g15280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093213 | 1e-180 | BT093213.1 Soybean clone JCVI-FLGm-17A23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017409618.1 | 1e-175 | PREDICTED: transcription factor bHLH35-like | ||||
Swissprot | Q2HIV9 | 3e-82 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A0S3R8B5 | 1e-173 | A0A0S3R8B5_PHAAN; Uncharacterized protein | ||||
STRING | XP_007154705.1 | 1e-137 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 8e-72 | bHLH family protein |