PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g15260.1

Common Name

LR48_Vigan627s000800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HB-PHD

Protein Properties

Length: 733aa MW: 83053.3 Da PI: 9.7865

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g15260.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33	9.9e-11	516	560	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L ++F+ n p ++ re+L+k+lgL++++V+ WF+N R+ Vang11g15260.1 516 RDSVEKLRQVFAVNELPPRSIREDLSKELGLDTEKVSKWFKNARY 560 678999*************************************97 PP
2	PHD	33.4	1.1e-11	253	308	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++ C +Ck++fH+kC++++l++e++p g +w+C+ C++k Vang11g15260.1 253 FCAKCKMreEPPHNDVIRCYgTCKRAFHQKCVDPSLDTENVPPGgqDWFCNFCECK 308 699999965555*****747****************999******985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	7.97E-12	246	311	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	1.3E-9	248	308	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	9.962	251	308	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	2.6E-6	253	306	IPR001965	Zinc finger, PHD-type
CDD	cd15504	6.12E-22	253	305	No hit	No description
Pfam	PF00628	2.1E-9	253	308	IPR019787	Zinc finger, PHD-finger
PROSITE pattern	PS01359	0	254	305	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE profile	PS50071	11.855	505	565	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.6E-10	506	559	IPR009057	Homeodomain-like
SMART	SM00389	3.6E-9	507	569	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-10	508	571	IPR009057	Homeodomain-like
CDD	cd00086	6.34E-8	513	569	No hit	No description
Pfam	PF00046	3.2E-8	516	560	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
LFLLLQTLVG LDIWIQSQGL EARGVLAVLS TWGISVKKSN DKGSKKSGHL KARTKGKKDK 60 VKVESKSHTK NVGTDVSKKR VISSLKIKGP RKDSSDKKLT TGQKLPLKNR KSSQKPSSKL 120 PGKKASLSSR KEGKDADGEV KLQKMKRKRT KKRQRNNLDL DDPSRLQRRA RYLLIKMKLE 180 QNLIDAYSGE GWKGQSREKI RPEKELQRAR KQILKCRLGI RDAIRQLDSL GSLSCIEDSA 240 IAPGGSGCQE HIFCAKCKMR EEPPHNDVIR CYGTCKRAFH QKCVDPSLDT ENVPPGGQDW 300 FCNFCECKME ILEAMNAHLG THFSLHSAWQ DVFKEEAAIP DGETTLLNPE EEWPSDDSED 360 DDYDPERKED SHNINMEGTN DSASDDLSSS TSLCYSDDEH SPVHGVSHEY LFANTSIDSD 420 ESEDKACGRR QRKAVDYKKL YDEMFGKEAP AYEQLSEDED WGPGKRKRRE KECDAVDSLM 480 TLHESENMHP NNEHNNMTKI ISSGTNIRRH CFRIPRDSVE KLRQVFAVNE LPPRSIREDL 540 SKELGLDTEK VSKWFKNARY LALKSRKHQA EGAANQHKGI TSTKNSILQN QEKTDLLKPK 600 TLKITTSHSQ KDVKNVSGRK KIKFSSKKRQ PEIPPPPGEN GNKDSMEMSD DVSLKKLLKK 660 KKKRLVNFTF AGDSQTAELE FERLCKLKQK LISMKQKLTR IQRLDAKGSD EAHCNEASIV 720 YVPTAVLREK TE*

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

LFLLLQTLVG LDIWIQSQGL EARGVLAVLS TWGISVKKSN DKGSKKSGHL KARTKGKKDK  60
VKVESKSHTK NVGTDVSKKR VISSLKIKGP RKDSSDKKLT TGQKLPLKNR KSSQKPSSKL  120
PGKKASLSSR KEGKDADGEV KLQKMKRKRT KKRQRNNLDL DDPSRLQRRA RYLLIKMKLE  180
QNLIDAYSGE GWKGQSREKI RPEKELQRAR KQILKCRLGI RDAIRQLDSL GSLSCIEDSA  240
IAPGGSGCQE HIFCAKCKMR EEPPHNDVIR CYGTCKRAFH QKCVDPSLDT ENVPPGGQDW  300
FCNFCECKME ILEAMNAHLG THFSLHSAWQ DVFKEEAAIP DGETTLLNPE EEWPSDDSED  360
DDYDPERKED SHNINMEGTN DSASDDLSSS TSLCYSDDEH SPVHGVSHEY LFANTSIDSD  420
ESEDKACGRR QRKAVDYKKL YDEMFGKEAP AYEQLSEDED WGPGKRKRRE KECDAVDSLM  480
TLHESENMHP NNEHNNMTKI ISSGTNIRRH CFRIPRDSVE KLRQVFAVNE LPPRSIREDL  540
SKELGLDTEK VSKWFKNARY LALKSRKHQA EGAANQHKGI TSTKNSILQN QEKTDLLKPK  600
TLKITTSHSQ KDVKNVSGRK KIKFSSKKRQ PEIPPPPGEN GNKDSMEMSD DVSLKKLLKK  660
KKKRLVNFTF AGDSQTAELE FERLCKLKQK LISMKQKLTR IQRLDAKGSD EAHCNEASIV  720
YVPTAVLREK TE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	151	MKRKRTKK
2	465	470	RKRREK
3	657	664	LKKKKKRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g15260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017409606.1	0.0	PREDICTED: pathogenesis-related homeodomain protein-like
TrEMBL	A0A0L9TFS6	0.0	A0A0L9TFS6_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R7Y9	0.0	A0A0S3R7Y9_PHAAN; Uncharacterized protein
STRING	XP_007154716.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5275	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-133	pathogenesis related homeodomain protein A

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]