PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g14670.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 384aa    MW: 43222.3 Da    PI: 7.2899
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g14670.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-153684148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd  l+ ++++ G+g +W + ++++g++R++k+c++rw++yl
   Vang11g14670.1 36 KGPWSPEEDAALKAYIEKNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 84
                     79*********************************************97 PP
2Myb_DNA-binding39.99.9e-1391133246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd ++ ++    G++ W+ Ia+ ++ gRt++++k++w++
   Vang11g14670.1  91 GGFTEEEDNIICNLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 133
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2173184IPR017930Myb domain
SuperFamilySSF466898.77E-2733131IPR009057Homeodomain-like
SMARTSM007174.8E-123586IPR001005SANT/Myb domain
PfamPF002492.6E-143684IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-233791IPR009057Homeodomain-like
CDDcd001671.37E-83884No hitNo description
PROSITE profilePS5129422.21285139IPR017930Myb domain
SMARTSM007171.3E-1189137IPR001005SANT/Myb domain
PfamPF002494.3E-1191133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2392139IPR009057Homeodomain-like
CDDcd001672.23E-893135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
LIFASTKNIK RNLIGERQQH NNMGRAPCCD KANVKKGPWS PEEDAALKAY IEKNGTGGNW  60
IALPQKIGLK RCGKSCRLRW LNYLRPNIKH GGFTEEEDNI ICNLYISIGS RWSIIAAQLP  120
GRTDNDIKNY WNTRLKKKLL GRRKQSNFNT KDTNNGIEEN SYSNALSSSA LERLQLHMQL  180
QSLQNPFSFY NNPALWPKLH PFQEKMIQSL QSLNDGSNPV VQDALPTPHV EQGQKDEFIY  240
KPQHDGAKIH SPQVHLLENI PSSNSGVPFV ASESNNNPMH SSLAPRAEAV EQTNNVGFQQ  300
LGALQTELDD ILNNRTMGYV PQEDHQMAEF DCFREMNGSK DSLIWWSNDS DTRSASSNSW  360
DSSATPALLT QGMFQDYELG YSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-23361397108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g14670.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017409638.10.0PREDICTED: transcription factor MYB36
SwissprotQ9FKL21e-100MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A0L9TF410.0A0A0L9TF41_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R8250.0A0A0S3R825_PHAAN; Uncharacterized protein
STRINGXP_007154791.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-90myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]