PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g14640.1 | ||||||||
Common Name | LR48_Vigan627s008600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | CO-like | ||||||||
Protein Properties | Length: 192aa MW: 20861.8 Da PI: 9.6762 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.3 | 1.3e-07 | 20 | 60 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++ + lfC+ ++ +lC C +++H H+ Vang11g14640.1 20 KPCDSCKLASAALFCRPDSAFLCIACDSKIHCAnklasrHE 60 78******99*********************5555666676 PP | |||||||
2 | CCT | 71 | 2.9e-24 | 119 | 163 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ae Vang11g14640.1 119 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRAE 163 9*****************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 5.4E-10 | 17 | 64 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.997 | 17 | 64 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.1E-5 | 19 | 61 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.26E-8 | 21 | 64 | No hit | No description |
PROSITE profile | PS51017 | 16.787 | 119 | 161 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.5E-18 | 119 | 161 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MGIEKGGLKG FRSGWTVPPK PCDSCKLASA ALFCRPDSAF LCIACDSKIH CANKLASRHE 60 RVWMCEVSSS SLDVGVVPDG NTVSEMSYSF GRNSSESSGI GLSGVSGGQG ATQLCGMDRE 120 ARVLRYREKR KNRKFEKTIR YASRKAYAET RPRIKGRFAK RAEIDSDVER LYSPGAASLM 180 LDSPYGVVPS F* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g14640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027920708.1 | 4e-77 | zinc finger protein CONSTANS-LIKE 5 | ||||
Swissprot | Q9FHH8 | 2e-31 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A4D6L096 | 8e-76 | A0A4D6L096_VIGUN; Zinc finger protein CONSTANS | ||||
STRING | XP_007154800.1 | 1e-70 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1302 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 4e-31 | CONSTANS-like 5 |
Publications ? help Back to Top | |||
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