PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g13650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | GRF | ||||||||
Protein Properties | Length: 358aa MW: 40271.8 Da PI: 8.7477 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.9 | 9.9e-25 | 78 | 121 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e Vang11g13650.1 78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 121 79***************************************987 PP | |||||||
2 | QLQ | 56.9 | 6.4e-20 | 10 | 44 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT++Q+q+L++Q+l+yKy+a++ +Pp+Ll+ i+ Vang11g13650.1 10 PFTPSQWQELEHQALIYKYMASGISIPPDLLFTIK 44 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.3E-11 | 9 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 8.4E-15 | 10 | 43 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.36 | 10 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.98 | 78 | 122 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.2E-20 | 79 | 121 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
LMMNGRNRFP FTPSQWQELE HQALIYKYMA SGISIPPDLL FTIKRTHLDS PLSSRLLPHQ 60 SQHFGWNYLP MGLGRKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGKNRSRKPV 120 EVLKTSPTTA TTITDASTPT ILSITKNSPA LSPTTHSLSH DTYHHHHPQH SPHSFLYHHP 180 SRPSSGVALS FQDNSAPLYV YGLKEEVDEH AFFTEPSGTM RSFSASSMED SWQLTPLTIS 240 SSSSSKQRSC SGLSNDNNEY SYLQLQSLSG NNSKQPQQDQ ACYISGSGSG IKCETFMKLG 300 KEEPQKTVHR FFDEWPPKSR GSWLDLDDKS STTQLSISIP TSSHDFATFS STTQRDG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g13650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007154592.1 | 0.0 | hypothetical protein PHAVU_003G131800g | ||||
TrEMBL | V7CCG7 | 0.0 | V7CCG7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007154592.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4043 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 7e-56 | growth-regulating factor 5 |