PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g13300.1 | ||||||||
Common Name | LR48_Vigan728s004600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 26811.3 Da PI: 6.9171 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.3e-05 | 203 | 225 | 8 | 30 |
HHHHHHHHHHHHHHHHHCTSCCC CS HLH 8 rErrRRdriNsafeeLrellPka 30 ErrRR+ ++ +fe Lr +lP+ Vang11g13300.1 203 SERRRREILKVSFEALRAILPPE 225 6********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MAVFMGCKEG EIELGFSNIP QDDIETALKN LFPEDFYMRF QSIDQNPYSS SSSSFIISST 60 NTFNQSINVP GTSHSNFPDV LGVASTQPIS HQPLSQVIPF PSHLPTPEGE HQEMVRALIR 120 VLSSTSQQQL SHQVLPHNSV KHPGAADVVR YIPDMTNPNI EPHTDFNFRR QNLKNTSLVR 180 ERNSTVQATD HISTLQHHFR MISERRRREI LKVSFEALRA ILPPETKVCY NLAMPSM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 203 | 208 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g13300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017410350.1 | 1e-167 | PREDICTED: putative transcription factor bHLH041 | ||||
TrEMBL | A0A0L9TG89 | 1e-164 | A0A0L9TG89_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R833 | 1e-166 | A0A0S3R833_PHAAN; Uncharacterized protein (Fragment) | ||||
STRING | XP_007154643.1 | 7e-82 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4150 | 33 | 54 |
Publications ? help Back to Top | |||
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