PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g12950.1 | ||||||||
Common Name | LR48_Vigan01g246700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ARR-B | ||||||||
Protein Properties | Length: 667aa MW: 73485.1 Da PI: 5.7307 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 78.7 | 7.2e-25 | 209 | 262 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl+W +eLH++F+ a++qL G++kA Pk+il+lm+++gL++e+v+SHLQk+Rl Vang11g12950.1 209 KTRLVWDTELHNKFLAAINQL-GIDKAFPKKILDLMNIDGLSRENVASHLQKFRL 262 68*******************.********************************8 PP | |||||||
2 | Response_reg | 80.1 | 7.3e-27 | 13 | 121 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+++ + +l+++l+k +y +v++++++ +ale+l++++ +Dl++ D++mp+mdG++ll++ e +lp+i+++++g++e + + + +G Vang11g12950.1 13 VLAVDDDRTYLTVLENLLRKCQY-NVTATTQSVKALEMLRKNRneFDLVISDVNMPEMDGFKLLQQVGLET-DLPVIMLSGYGDKERVMKGVIYG 105 799********************.***************999999**********************7766.8********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a dfl+Kp+ ++el + Vang11g12950.1 106 ACDFLTKPVRIQELQN 121 *************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.0E-135 | 1 | 665 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 2.0E-40 | 10 | 144 | No hit | No description |
SuperFamily | SSF52172 | 2.7E-34 | 10 | 133 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 5.1E-30 | 11 | 123 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.814 | 12 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.4E-24 | 13 | 121 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 8.26E-27 | 14 | 126 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 206 | 266 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.2 | 206 | 265 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-17 | 207 | 266 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-22 | 209 | 262 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 667 aa Download sequence Send to blast |
MVEEDHFPVG LRVLAVDDDR TYLTVLENLL RKCQYNVTAT TQSVKALEML RKNRNEFDLV 60 ISDVNMPEMD GFKLLQQVGL ETDLPVIMLS GYGDKERVMK GVIYGACDFL TKPVRIQELQ 120 NIWQHVVRRK IDSKDKNKTA SEEKDCSMAC KFANEEEPCT VAGECSQAFA PKTNANQNIK 180 VDHKRKERCE AEEIEEDDKE NDEPSNQKKT RLVWDTELHN KFLAAINQLG IDKAFPKKIL 240 DLMNIDGLSR ENVASHLQKF RLGLKKPNPY HRMGSVDCFR TSSESGAMLS TTSPSYAYAP 300 GGRFSVLNSP SCLNTRGMNS SATVQASQSR NINSSSIKTH GNMHSSMFSA NQTSSLLQGI 360 PTSMEANLFK PNNSAAGIRR FNPLDHSAAL KDFSSFSENI ATVRNAANIS LPGLSNNHLL 420 FQGISQLKHH SEAFRNHSSF GAAAVKTQSF DPNSFGYSKM GGDYSNKRWQ EAAPISTCPS 480 NTSAVSNVFN NDQLLQHNFK LSSSNFCSRN SPVGFSSSVP LEDDVLGEML HQEGLLGNIL 540 LASCYTQHNQ GGCSKDTSQT FNSINPVISS NGGTSSLGHS YEQNSTVDNN IIDASLVGQM 600 NGVNPSITVC SEGENFYSMK SNDAYVLQSM KSGEGLLQNS LESLDDILNE IDEQDLNAIM 660 LMNEDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-24 | 207 | 266 | 3 | 62 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g12950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017419207.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like | ||||
TrEMBL | A0A0L9TQY4 | 0.0 | A0A0L9TQY4_PHAAN; Two-component response regulator | ||||
STRING | XP_007154913.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 2e-92 | response regulator 12 |
Publications ? help Back to Top | |||
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