PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g12140.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 381aa    MW: 43241.2 Da    PI: 5.0572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g12140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.4e-16164215155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Vang11g12140.1 164 SKYRGVARHHHNGRWEARIGKvF---G-NKYLYLGTYATQEEAATAYDLAAIEYRG 215
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.48163129IPR001471AP2/ERF domain
SMARTSM003800.06882135IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-696131IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-698130IPR001471AP2/ERF domain
CDDcd000189.16E-25164225No hitNo description
SuperFamilySSF541719.15E-18164225IPR016177DNA-binding domain
PfamPF008471.5E-12164215IPR001471AP2/ERF domain
SMARTSM003804.8E-25165229IPR001471AP2/ERF domain
PROSITE profilePS5103218.386165223IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17165224IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MVKPFPWPKD HTHSFEPRKT MRPTLPIILM QPTLSPPRSN EQGEVSPETP LLNAAPYTEE  60
SLGTDGLVAT KLIYGTSIAG MKHRTKKDDK VSCSLNTYIC AYDNEVAAAH AYDLAALKYW  120
GQDTILNFPL SNYLNELKEM EGQSREEYIG SLRRKSSGFS RGISKYRGVA RHHHNGRWEA  180
RIGKVFGNKY LYLGTYATQE EAATAYDLAA IEYRGLNAVT NFDLSRYIKW LKPNNNTNNN  240
DQISINLSDM NNNCTSSNFT PNPDQEQEQE LSFLHNQDSV NTVVEEATSV THQPRASGAT  300
SALELLLQSS KFKEMMEMTS VANMSTQMES ELPQCAFPDH IQTYFEYEDS NRYEEVDDLM  360
FKFNEFSSIV PFYHCDEFQS *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g12140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434142.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN45e-65AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0S3R6M10.0A0A0S3R6M1_PHAAN; Uncharacterized protein
STRINGXP_007154853.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.21e-59ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]