PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g11320.1
Common NameLR48_Vigan01g284400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 321aa    MW: 35975.5 Da    PI: 8.8049
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g11320.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM134.76.2e-421111028129
             NAM  28 leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWv 122
                     +++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++lvg+kktLvfy+grapkgek++Wv
  Vang11g11320.1  11 FSA-RAIGEVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFR-GKSLVGMKKTLVFYRGRAPKGEKSNWV 103
                     444.67***************888999****************************************.999************************ PP

             NAM 123 mheyrle 129
                     mheyrle
  Vang11g11320.1 104 MHEYRLE 110
                     *****85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100546.5851134IPR003441NAC domain
SuperFamilySSF1019411.23E-486134IPR003441NAC domain
PfamPF023653.2E-1726109IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MQNELVIDTN FSARAIGEVD LNKSEPWELP WKAKMGEKEW YFFCVRDRKY PTGLRTNRAT  60
EAGYWKATGK DKEIFRGKSL VGMKKTLVFY RGRAPKGEKS NWVMHEYRLE GKFSVHNLPK  120
TAKNEWVICR VFQKSSAGKK THISGIMRLD SLANELGSSA LPPLSDSSPS IGNTKPLNES  180
AYVPCFSNPI NVQRNQDGVF DSLNNSIYGV SPNPMDFLPR MPPSTSFYSA QGVQAVPNLT  240
FPGSVYSLQD HTNLRAMCEN NGNGYKSERD MISVSQETGL TTDINPETSS NFDMGRRHFD  300
NHNHPSVSVA PVDLDGLWNY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-411014043171NO APICAL MERISTEM PROTEIN
1ut4_B2e-411014043171NO APICAL MERISTEM PROTEIN
1ut7_A2e-411014043171NO APICAL MERISTEM PROTEIN
1ut7_B2e-411014043171NO APICAL MERISTEM PROTEIN
3swm_A2e-411014046174NAC domain-containing protein 19
3swm_B2e-411014046174NAC domain-containing protein 19
3swm_C2e-411014046174NAC domain-containing protein 19
3swm_D2e-411014046174NAC domain-containing protein 19
3swp_A2e-411014046174NAC domain-containing protein 19
3swp_B2e-411014046174NAC domain-containing protein 19
3swp_C2e-411014046174NAC domain-containing protein 19
3swp_D2e-411014046174NAC domain-containing protein 19
4dul_A2e-411014043171NAC domain-containing protein 19
4dul_B2e-411014043171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g11320.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421863.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-132NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0L9TRS40.0A0A0L9TRS4_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R7F90.0A0A0S3R7F9_PHAAN; Uncharacterized protein
STRINGXP_007155297.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-127NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]