PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g11320.1 | ||||||||
Common Name | LR48_Vigan01g284400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 321aa MW: 35975.5 Da PI: 8.8049 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 134.7 | 6.2e-42 | 11 | 110 | 28 | 129 |
NAM 28 leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWv 122 +++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ +++lvg+kktLvfy+grapkgek++Wv Vang11g11320.1 11 FSA-RAIGEVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFR-GKSLVGMKKTLVFYRGRAPKGEKSNWV 103 444.67***************888999****************************************.999************************ PP NAM 123 mheyrle 129 mheyrle Vang11g11320.1 104 MHEYRLE 110 *****85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 46.585 | 1 | 134 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.23E-48 | 6 | 134 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-17 | 26 | 109 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MQNELVIDTN FSARAIGEVD LNKSEPWELP WKAKMGEKEW YFFCVRDRKY PTGLRTNRAT 60 EAGYWKATGK DKEIFRGKSL VGMKKTLVFY RGRAPKGEKS NWVMHEYRLE GKFSVHNLPK 120 TAKNEWVICR VFQKSSAGKK THISGIMRLD SLANELGSSA LPPLSDSSPS IGNTKPLNES 180 AYVPCFSNPI NVQRNQDGVF DSLNNSIYGV SPNPMDFLPR MPPSTSFYSA QGVQAVPNLT 240 FPGSVYSLQD HTNLRAMCEN NGNGYKSERD MISVSQETGL TTDINPETSS NFDMGRRHFD 300 NHNHPSVSVA PVDLDGLWNY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-41 | 10 | 140 | 43 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-41 | 10 | 140 | 43 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-41 | 10 | 140 | 43 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-41 | 10 | 140 | 43 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-41 | 10 | 140 | 46 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-41 | 10 | 140 | 46 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-41 | 10 | 140 | 46 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-41 | 10 | 140 | 46 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-41 | 10 | 140 | 46 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-41 | 10 | 140 | 46 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-41 | 10 | 140 | 46 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-41 | 10 | 140 | 46 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-41 | 10 | 140 | 43 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-41 | 10 | 140 | 43 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g11320.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017421863.1 | 0.0 | PREDICTED: NAC domain-containing protein 100-like | ||||
Swissprot | Q9FLJ2 | 1e-132 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A0L9TRS4 | 0.0 | A0A0L9TRS4_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R7F9 | 0.0 | A0A0S3R7F9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155297.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-127 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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