PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g11080.2 | ||||||||
Common Name | LR48_Vigan01g274600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 539aa MW: 59380.2 Da PI: 6.9581 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00082 | 451 | 473 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H Vang11g11080.2 451 HECPICLKVFPSGQALGGHKRSH 473 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.084 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.554 | 72 | 99 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.23E-8 | 73 | 94 | No hit | No description |
Pfam | PF13912 | 1.7E-6 | 74 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.23E-8 | 357 | 384 | No hit | No description |
Pfam | PF13912 | 3.2E-12 | 362 | 386 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.284 | 362 | 389 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.056 | 362 | 384 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 364 | 384 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.995 | 451 | 473 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.2E-13 | 451 | 474 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.071 | 451 | 473 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 453 | 473 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 539 aa Download sequence Send to blast |
LGGHMRSHIT NLSSEEKEKL PTRKLFSSSL NNDGDKDSEA AATNAGYGLR ENPKKTWRIS 60 DHSSEDALVF DKFCKECGKA FHSWKALFGH MKCHSEKERA SDSLEDQDSW TNAKVVMDSQ 120 SDNEATAPNK RRRSKRRTRY TVASAAATSS VVSFANPSSS LSEVEQEQEE VAMSLMMLSR 180 DVSPWSGPHS VAESSDNNSA YFEARSSVRT NLVAKFDGST DFTPNTARMI KQSDNKWEVG 240 NSENPSSIRG KSSQRLTTTA ATVETTEHGF GANKSGVSSK GYEKVNNSEL QYVSALEDSE 300 GERGRSRVNE PESILSKSAA TGNKYNSIKT KLIGSELKSN KNWVDKASEP ESSKNSHKRG 360 KFECTTCNKT FHSYQALGGH RASHKKIKGC FASKNESSEN SIETDLSPDP ITTEHKLVNN 420 TDREYLGEHQ QGAGFHDEVE TVTESKKSKG HECPICLKVF PSGQALGGHK RSHMTGGSES 480 RNFQTVVLQE PVAEIRDFLD LNLPAATEEE SNSHADSNRP WWVVQDNHKQ EALVGLIL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 135 | NKRRRSKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g11080.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017427270.1 | 0.0 | PREDICTED: uncharacterized protein LOC108335682 | ||||
TrEMBL | A0A0L9TRM1 | 0.0 | A0A0L9TRM1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R7C8 | 0.0 | A0A0S3R7C8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155253.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 5e-28 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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