PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g11080.1 | ||||||||
Common Name | LR48_Vigan01g274600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 564aa MW: 62212.5 Da PI: 7.0757 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.6 | 0.00087 | 476 | 498 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H Vang11g11080.1 476 HECPICLKVFPSGQALGGHKRSH 498 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.88E-5 | 8 | 35 | No hit | No description |
SMART | SM00355 | 0.38 | 11 | 33 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.0059 | 11 | 33 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.785 | 11 | 33 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 13 | 33 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.084 | 97 | 119 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.554 | 97 | 124 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.34E-8 | 98 | 119 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 99 | 119 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.8E-6 | 99 | 121 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.34E-8 | 382 | 409 | No hit | No description |
PROSITE profile | PS50157 | 10.284 | 387 | 414 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.056 | 387 | 409 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.4E-12 | 387 | 411 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 389 | 409 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.071 | 476 | 498 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.3E-13 | 476 | 499 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.995 | 476 | 498 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 478 | 498 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 564 aa Download sequence Send to blast |
MEGDQIQEFK HACKFCGKCF PCGRSLGGHM RSHITNLSSE EKEKLPTRKL FSSSLNNDGD 60 KDSEAAATNA GYGLRENPKK TWRISDHSSE DALVFDKFCK ECGKAFHSWK ALFGHMKCHS 120 EKERASDSLE DQDSWTNAKV VMDSQSDNEA TAPNKRRRSK RRTRYTVASA AATSSVVSFA 180 NPSSSLSEVE QEQEEVAMSL MMLSRDVSPW SGPHSVAESS DNNSAYFEAR SSVRTNLVAK 240 FDGSTDFTPN TARMIKQSDN KWEVGNSENP SSIRGKSSQR LTTTAATVET TEHGFGANKS 300 GVSSKGYEKV NNSELQYVSA LEDSEGERGR SRVNEPESIL SKSAATGNKY NSIKTKLIGS 360 ELKSNKNWVD KASEPESSKN SHKRGKFECT TCNKTFHSYQ ALGGHRASHK KIKGCFASKN 420 ESSENSIETD LSPDPITTEH KLVNNTDREY LGEHQQGAGF HDEVETVTES KKSKGHECPI 480 CLKVFPSGQA LGGHKRSHMT GGSESRNFQT VVLQEPVAEI RDFLDLNLPA ATEEESNSHA 540 DSNRPWWVVQ DNHKQEALVG LIL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 160 | NKRRRSKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g11080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017427270.1 | 0.0 | PREDICTED: uncharacterized protein LOC108335682 | ||||
TrEMBL | A0A0L9TRM1 | 0.0 | A0A0L9TRM1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R7C8 | 0.0 | A0A0S3R7C8_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155253.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1101 | 30 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 2e-31 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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