PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g10910.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 560aa    MW: 63818.5 Da    PI: 6.8821
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g10910.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.0012299320122
                     EEETTTTEEESSHHHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                     + C  Cgk F++  + k+H ++
  Vang11g10910.1 299 FYCVLCGKKFKSEKQWKNHEQS 320
                     78*****************876 PP
2zf-C2H211.80.00075528547120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     y+C  Cg+ F ++  L++H+
  Vang11g10910.1 528 YTCDACGEEFESRNKLHKHL 547
                     9******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465656.02E-22881IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1108.8E-23879IPR001623DnaJ domain
SMARTSM002714.3E-211072IPR001623DnaJ domain
PROSITE profilePS5007618.6991180IPR001623DnaJ domain
CDDcd062575.09E-171169IPR001623DnaJ domain
PfamPF002263.5E-201277IPR001623DnaJ domain
PRINTSPR006251.6E-121331IPR001623DnaJ domain
PRINTSPR006251.6E-123146IPR001623DnaJ domain
PRINTSPR006251.6E-125272IPR001623DnaJ domain
PROSITE patternPS0063605776IPR018253DnaJ domain, conserved site
SuperFamilySSF576674.37E-12284328No hitNo description
SMARTSM004511.7E-5296330IPR003604Zinc finger, U1-type
PfamPF121717.8E-11299324IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.27299323IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.037299328IPR007087Zinc finger, C2H2
PROSITE patternPS000280301323IPR007087Zinc finger, C2H2
SMARTSM003550.27528552IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785528553IPR007087Zinc finger, C2H2
PROSITE patternPS000280530552IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MASSSSLAKR CHYEVLDLPQ DCAPEEIRSS YRRLALQRHP DKLIKSGISQ EEATAQFQEL  60
QHAYEVLSDP KERAWYDSHR SQILFSDPNS LSKSVVPDLF SFFSNTVYSG YSDTGKGFYK  120
VYSDVFDKIH ANEINFARKM GLGVEAVRQA PLMGNLDSPY AQVTAFYGYW LGFCTVMDFF  180
WVDEYDVMAG PNRKSRRLME EENNKARKKA RREYNDTVRR LGDFVKKRDK RVIDMRVKKN  240
MEMERKKEEE RETKKRLEKE RKERAMAYEE ADWAKVDNEE VEEWVEEGEE EKKKNDKEFY  300
CVLCGKKFKS EKQWKNHEQS KKHKERVADG NQDCDNDENG VVDEFSDASL AKEGEDSNGS  360
VNLDDSGNQD GDNDENGVLE AMVAGHKNRK PGASTHKSKA SIVPSQIETE KDEFGPMEYN  420
NRKSTRKKRR AKKEKGRENW EESQGTASSC NDENINGNGN DNAHGEESSS QHFTENGDNI  480
IGNEQVTRGN KISNQPADKK GAGKDTKITA KISSKGRKAK VTSKNIGYTC DACGEEFESR  540
NKLHKHLGDS GHATIIRGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1425432RKKRRAKK
2426431KKRRAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g10910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017411819.10.0PREDICTED: DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-160JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A0S3R7930.0A0A0S3R793_PHAAN; Uncharacterized protein
STRINGGLYMA05G00445.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-148DNAJ heat shock N-terminal domain-containing protein