PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g10880.1
Common NameLR48_Vigan01g272500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 365aa    MW: 40132.6 Da    PI: 9.7469
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g10880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.71.6e-2851144389
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                     g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl+  k  i++l+ +++++  +    ++   s+  s+ +        
  Vang11g10880.1  51 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLNQPSKVVDWLLEVTKSDIDKLPPLQFPHCFAQfH-QQTPLSGT-SQFSlgslydgv 143
                     78*************************************************************6666533321.11111111.111122344444 PP

             TCP  89 k 89 
                     +
  Vang11g10880.1 144 N 144
                     2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.66652110IPR017887Transcription factor TCP subgroup
PfamPF036342.6E-2752169IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MMNESSSKVQ QGNQQEGENI KIEKLSKAAS TSRSWSAFRN PRIVRVSRSL GGKDRHSKVC  60
TIRGLRDRRI RLSVPTAIQL YDLQDKLGLN QPSKVVDWLL EVTKSDIDKL PPLQFPHCFA  120
QFHQQTPLSG TSQFSLGSLY DGVNSSFLKD GGNQNLMTKS TRYWDLDSQN RTELAESVST  180
SQKGKFWIKP NELENHQNGI VGVSTRNREE SSAHCKVFPL GTNSSYLPGL SNNAITHNSY  240
HHSEPSTLSL SHLGSHELFP SHPSSGSSVQ FSSSNFCGAS GPQLLFCPPS ATPSAFYSVE  300
SDPRQSNSVQ IFSSSSQVMM PHPLIQSIHS TTSPLRRLAT SLSSKLFDSD NSDRSQQGKG  360
STRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1857111155Putative transcription factor PCF6
5zkt_B4e-1857111155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g10880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017423439.10.0PREDICTED: transcription factor TCP5
RefseqXP_017423444.10.0PREDICTED: transcription factor TCP5
TrEMBLA0A0L9TSM60.0A0A0L9TSM6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R7F60.0A0A0S3R7F6_PHAAN; Uncharacterized protein
STRINGXP_007155224.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-52TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]