PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g10330.2 | ||||||||
Common Name | LR48_Vigan01g278800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 264aa MW: 30388.3 Da PI: 6.4932 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117 | 1.2e-36 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkC+++C lapyfpa+qpk f nvh+lFG+sn++k+lk l+++++++am+s++ +A+ r + Pv+G+ + i +lq q+ +++el+ Vang11g10330.2 10 ACAACKHQRRKCTSECLLAPYFPADQPKVFLNVHRLFGVSNIVKILKILEPNQKKIAMDSIIIQANYRDKYPVHGCWEEICRLQYQIWLAEEELH 104 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++ ++ Vang11g10330.2 105 AVYQQ 109 99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.679 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.3E-36 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MTLKGGTTQA CAACKHQRRK CTSECLLAPY FPADQPKVFL NVHRLFGVSN IVKILKILEP 60 NQKKIAMDSI IIQANYRDKY PVHGCWEEIC RLQYQIWLAE EELHAVYQQL QICRQQQQQQ 120 QQQQHRPPPM PDDVTSQLEL GMTPCTNNNA LPLFNHHTPQ PNTYNNNVTS FSVSQQHSYS 180 NSNCMDYSSL YLDSKDNAMN PLWVQYPCSN NDNSVGMQTP MLSSQPLPIQ QNVVEDYVDM 240 PPIFYSLDDR QSYIYSKEAY ESR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-25 | 6 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-25 | 6 | 110 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g10330.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435567.1 | 0.0 | PREDICTED: LOB domain-containing protein 27-like | ||||
TrEMBL | A0A0L9TS07 | 0.0 | A0A0L9TS07_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R8A1 | 0.0 | A0A0S3R8A1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155357.1 | 1e-173 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-45 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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