PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g10330.1 | ||||||||
Common Name | LR48_Vigan01g278800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 271aa MW: 31088.1 Da PI: 6.2919 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.9 | 1.2e-36 | 17 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkC+++C lapyfpa+qpk f nvh+lFG+sn++k+lk l+++++++am+s++ +A+ r + Pv+G+ + i +lq q+ +++el+ Vang11g10330.1 17 ACAACKHQRRKCTSECLLAPYFPADQPKVFLNVHRLFGVSNIVKILKILEPNQKKIAMDSIIIQANYRDKYPVHGCWEEICRLQYQIWLAEEELH 111 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++ ++ Vang11g10330.1 112 AVYQQ 116 99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.679 | 16 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.8E-36 | 17 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
LLLGDSTMTL KGGTTQACAA CKHQRRKCTS ECLLAPYFPA DQPKVFLNVH RLFGVSNIVK 60 ILKILEPNQK KIAMDSIIIQ ANYRDKYPVH GCWEEICRLQ YQIWLAEEEL HAVYQQLQIC 120 RQQQQQQQQQ QHRPPPMPDD VTSQLELGMT PCTNNNALPL FNHHTPQPNT YNNNVTSFSV 180 SQQHSYSNSN CMDYSSLYLD SKDNAMNPLW VQYPCSNNDN SVGMQTPMLS SQPLPIQQNV 240 VEDYVDMPPI FYSLDDRQSY IYSKEAYESR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-25 | 13 | 117 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-25 | 13 | 117 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g10330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017435567.1 | 0.0 | PREDICTED: LOB domain-containing protein 27-like | ||||
TrEMBL | A0A0L9TS07 | 0.0 | A0A0L9TS07_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R8A1 | 0.0 | A0A0S3R8A1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155357.1 | 1e-173 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-45 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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