PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang11g10290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 56aa MW: 6137.07 Da PI: 10.6122 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 22 | 4.1e-07 | 2 | 25 | 32 | 55 |
AP2 32 slgkfgtaeeAakaaiaarkkleg 55 +lg+f+tae A +a+++a ++++g Vang11g10290.1 2 WLGTFDTAEAAVRAYDEATLRFKG 25 9*****************999887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.62E-10 | 1 | 35 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.32E-14 | 1 | 35 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.3E-15 | 1 | 34 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.182 | 1 | 33 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0013 | 1 | 39 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 56 aa Download sequence Send to blast |
MWLGTFDTAE AAVRAYDEAT LRFKGNKAKL NFPENVIVVR PPPSRFSGNL TLGLR* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang11g10290.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 3e-60 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013616576.1 | 1e-16 | PREDICTED: ethylene-responsive transcription factor ABR1-like | ||||
Refseq | XP_017417472.1 | 8e-17 | PREDICTED: ethylene-responsive transcription factor ERF110-like | ||||
Swissprot | Q9FGF8 | 2e-16 | ABR1_ARATH; Ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A078IAC0 | 2e-15 | A0A078IAC0_BRANA; BnaC02g43290D protein | ||||
TrEMBL | A0A0D3AYQ8 | 2e-15 | A0A0D3AYQ8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A1J3DV09 | 2e-15 | A0A1J3DV09_NOCCA; Ethylene-responsive transcription factor ABR1 (Fragment) | ||||
STRING | Bo2g166380.1 | 4e-16 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4919 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64750.1 | 8e-19 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|