PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g09430.1 | ||||||||
Common Name | LR48_Vigan01g258800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 239aa MW: 26973.9 Da PI: 6.7057 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 3.8e-19 | 12 | 61 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 ++++GVr+++ +g+Wv+eIr+p +r++lg+f taeeAa+a+++a+ + Vang11g09430.1 12 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDQAAILMS 61 59*******9.**********8.....334*********************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.68E-34 | 12 | 72 | No hit | No description |
SuperFamily | SSF54171 | 1.77E-20 | 13 | 71 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.8E-12 | 13 | 60 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-33 | 13 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.944 | 13 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-40 | 13 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010143 | Biological Process | cutin biosynthetic process | ||||
GO:0010166 | Biological Process | wax metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
LNPNNTIMVQ TKKFRGVRQR HWGSWVSEIR HPLLKRRVWL GTFETAEEAA RAYDQAAILM 60 SGRNAKTNFP ITQTPEGDPK SITSEDTPSS TSKDLEEILH AKLRKCGKVP SPSMTCLRLD 120 TENSHIGVWQ KRAGRRSDSN WVMTVQLGKK STDNETHQAD SSTSLSLPSS DHHHHHRESP 180 SGVTGHHQHE EVVRGEIDEE ERIALQMIEE LLNDRNCPSP SFSNFQERDG GDDDTFFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-17 | 12 | 71 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g09430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017433802.1 | 1e-173 | PREDICTED: ethylene-responsive transcription factor WIN1-like | ||||
Swissprot | Q9XI33 | 1e-76 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A0L9TRJ0 | 1e-172 | A0A0L9TRJ0_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R755 | 1e-172 | A0A0S3R755_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155006.1 | 1e-158 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF576 | 33 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 9e-60 | ERF family protein |