PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g08730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YB | ||||||||
Protein Properties | Length: 212aa MW: 23434.7 Da PI: 4.3133 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 57.8 | 2.6e-18 | 65 | 150 | 10 | 87 |
NF-YB 10 ianvsrimkkvlPanakiskdaketvqec........vsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 ia +++i+k++lP + ++++da++++ ec ++efi +++se+++ c+re+++ti+++ +l al lGf +y+e++ + Vang11g08730.1 65 IATMTKIIKEMLPPDVRVARDAQDLLIECcvdvnqfvIVEFINLISSESNEVCNREEKRTIAPEHVLKALQVLGFGEYIEEVYAAY 150 899**********************999944444444479****************************************986543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 2.2E-14 | 65 | 134 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 9.69E-28 | 65 | 196 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.5E-30 | 65 | 194 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MVNAFGAVWV ALIGCERELV LLSCETVIIN SYISLSHVLA LAPSLPSATT NFNRAFWDSS 60 PLSIIATMTK IIKEMLPPDV RVARDAQDLL IECCVDVNQF VIVEFINLIS SESNEVCNRE 120 EKRTIAPEHV LKALQVLGFG EYIEEVYAAY EQHKMETMQD SLKGGKWSNG AEMTEEEALA 180 EQQRMFAEAR ARMNGGGITS KQPDTDQSLD S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 6e-29 | 66 | 190 | 19 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g08730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT136794 | 1e-117 | BT136794.1 Lotus japonicus clone JCVI-FLLj-3M19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022639374.1 | 2e-96 | protein Dr1 homolog isoform X1 | ||||
Refseq | XP_022639376.1 | 2e-96 | protein Dr1 homolog isoform X1 | ||||
Swissprot | P49592 | 7e-76 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A3Q0F9S9 | 4e-95 | A0A3Q0F9S9_VIGRR; protein Dr1 homolog isoform X1 | ||||
STRING | XP_007155169.1 | 3e-93 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 3e-78 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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