PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g08590.2 | ||||||||
Common Name | LR48_Vigan01g268700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 23621.9 Da PI: 8.6057 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.8 | 8.8e-16 | 48 | 97 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grW AeI+d s ++ r +lg+f+ aeeAa a++ a++ l+g Vang11g08590.2 48 KFLGVRQRP-SGRWIAEIKDSS---QKLRLWLGTFDKAEEAALAYDCAARLLRG 97 789******.7*********42...36**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.33E-31 | 47 | 106 | No hit | No description |
SMART | SM00380 | 1.7E-31 | 48 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-27 | 48 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-19 | 48 | 105 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.73 | 48 | 105 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.9E-10 | 49 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-7 | 49 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-7 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEDIDSSELS HQSQNQNKNL SLMAIEIDKP YEKRVMKIPK VGKKIEKKFL GVRQRPSGRW 60 IAEIKDSSQK LRLWLGTFDK AEEAALAYDC AARLLRGRNA KTNFPNPGIM NTHEEDYSIL 120 GKNPRSYQLL KHAVMKNHAL SASLYSTFMP SWKNQIMLRD EHDTLVEETI VCSIPEQGSA 180 CCGISFGSSK VYSSVVVAPS FSVSSHDETP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-15 | 47 | 105 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g08590.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017434047.1 | 1e-158 | PREDICTED: ethylene-responsive transcription factor CRF1-like | ||||
TrEMBL | A0A0L9TRL3 | 1e-156 | A0A0L9TRL3_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155177.1 | 1e-131 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 6e-16 | related to AP2 11 |
Publications ? help Back to Top | |||
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