PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g08370.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 573aa    MW: 65271.9 Da    PI: 7.1058
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g08370.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.19.6e-181322051
                    HHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF 20 ilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +lKKA+ELSvLCdaeva+iifs++gklye+ss
  Vang11g08370.2  1 LLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 32
                    79****************************96 PP
2SRF-TF689.4e-2260971451
                    HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ++Rrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  Vang11g08370.2 60 IQRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 97
                    68**********************************96 PP
3SRF-TF689.4e-221251621451
                     HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  14 skRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     ++Rrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  Vang11g08370.2 125 IQRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 162
                     68**********************************96 PP
4K-box85.41.2e-2819127516100
           K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + +qe+ +Lk+++e Lqr+qR+llGedL +++  +L+qLe+qLe +lk+iRs+K++++l+q+ +l ++e  l e+n+ Lr+klee
  Vang11g08370.2 191 QNYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTTDLEQLENQLEVALKNIRSTKTQFMLDQLADLHHRETLLVETNNVLRSKLEE 275
                     4579******************************************************************************987 PP
5K-box90.14.1e-304105064100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     ++  ++++  +e++  e++kLk+++e Lqr qR+++Ge+L++++l+ Lq+LeqqL+++lk+iRs+Kn+ ++e+i+el kk k+l+e+n+ L kk+
  Vang11g08370.2 410 KQEGAADQPPNENWAIEHEKLKARVEVLQRHQRNFMGEELDNINLRGLQSLEQQLDSALKHIRSRKNQAMHESISELHKKDKALRERNNLLAKKI 504
                     455556777899**********************************************************************************9 PP

           K-box  99 ee 100
                     +e
  Vang11g08370.2 505 KE 506
                     87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.85E-18151IPR002100Transcription factor, MADS-box
SMARTSM004326.5E-7133IPR002100Transcription factor, MADS-box
PfamPF003197.7E-13130IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.885134IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-183998IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.1665299IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-2253116IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-186176IPR002100Transcription factor, MADS-box
PfamPF003191.4E-166295IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-187697IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-18104163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.166117164IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-22118182IPR002100Transcription factor, MADS-box
PfamPF003191.4E-16127160IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.355189279IPR002487Transcription factor, K-box
PfamPF014866.2E-25191273IPR002487Transcription factor, K-box
PfamPF014863.1E-25419504IPR002487Transcription factor, K-box
PROSITE profilePS5129715.228420510IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
LLKKAYELSV LCDAEVALII FSNRGKLYEF SSTSSMMKTL EKYQKYSYSA LETTRPINDI  60
QRRNGLLKKA YELSVLCDAE VALIIFSNRG KLYEFSSTSS MMKTLEKYQK YSYSALETTR  120
PINDIQRRNG LLKKAYELSV LCDAEVALII FSNRGKLYEF SSTSSMMKTL EKYQKYSYSA  180
LETTRPINDI QNYQEYLRLK ARVEVLQRSQ RNLLGEDLAQ MNTTDLEQLE NQLEVALKNI  240
RSTKTQFMLD QLADLHHRET LLVETNNVLR SKLEESNNSQ VSLALEAGGP NIHYTNFPPQ  300
TEGFFQPAGV NSNLQIGFNQ IGGDDANVGA SSLRAEAQVE NDHEFRRAYS LQLASSEAIV  360
EKLQEFLNGK GKSGVEKDRK QDQQASHLLK EKVCMERILE RYERHSYAEK QEGAADQPPN  420
ENWAIEHEKL KARVEVLQRH QRNFMGEELD NINLRGLQSL EQQLDSALKH IRSRKNQAMH  480
ESISELHKKD KALRERNNLL AKKIKEKEKA VVPQEQEGLL NNGDVTSLMV TKPLESLNIG  540
GSPEARCNEG TPTSTQPKTI IPPWMVTLPT DE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A5e-231895069103Developmental protein SEPALLATA 3
4ox0_B5e-231895069103Developmental protein SEPALLATA 3
4ox0_C5e-231895069103Developmental protein SEPALLATA 3
4ox0_D5e-231895069103Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g08370.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932640.0BT093264.1 Soybean clone JCVI-FLGm-14C7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017427309.11e-146PREDICTED: MADS-box protein CMB1-like
SwissprotQ7Y0405e-81EJ2_SOLLC; MADS-box protein EJ2
TrEMBLA0A4D6KYL70.0A0A4D6KYL7_VIGUN; MADS-box transcription factor
STRINGXP_007155209.11e-135(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.12e-66MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]