PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g08370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 591aa MW: 67226.1 Da PI: 7.1367 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55.1 | 9.9e-18 | 1 | 32 | 20 | 51 |
HHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 20 ilKKAeELSvLCdaevaviifsstgklyeyss 51 +lKKA+ELSvLCdaeva+iifs++gklye+ss Vang11g08370.1 1 LLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 32 79****************************96 PP | |||||||
2 | SRF-TF | 67.9 | 9.7e-22 | 60 | 97 | 14 | 51 |
HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++Rrng+lKKA+ELSvLCdaeva+iifs++gklye+ss Vang11g08370.1 60 IQRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 97 68**********************************96 PP | |||||||
3 | SRF-TF | 67.9 | 9.7e-22 | 125 | 162 | 14 | 51 |
HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++Rrng+lKKA+ELSvLCdaeva+iifs++gklye+ss Vang11g08370.1 125 IQRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 162 68**********************************96 PP | |||||||
4 | K-box | 85.3 | 1.3e-28 | 191 | 275 | 16 | 100 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +qe+ +Lk+++e Lqr+qR+llGedL +++ +L+qLe+qLe +lk+iRs+K++++l+q+ +l ++e l e+n+ Lr+klee Vang11g08370.1 191 QNYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTTDLEQLENQLEVALKNIRSTKTQFMLDQLADLHHRETLLVETNNVLRSKLEE 275 4579******************************************************************************987 PP | |||||||
5 | K-box | 90 | 4.3e-30 | 428 | 524 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ ++++ +e++ e++kLk+++e Lqr qR+++Ge+L++++l+ Lq+LeqqL+++lk+iRs+Kn+ ++e+i+el kk k+l+e+n+ L kk+ Vang11g08370.1 428 KQEGAADQPPNENWAIEHEKLKARVEVLQRHQRNFMGEELDNINLRGLQSLEQQLDSALKHIRSRKNQAMHESISELHKKDKALRERNNLLAKKI 522 455556777899**********************************************************************************9 PP K-box 99 ee 100 +e Vang11g08370.1 523 KE 524 87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 8.11E-18 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.5E-7 | 1 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.0E-13 | 1 | 30 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.885 | 1 | 34 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.8E-18 | 39 | 98 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.166 | 52 | 99 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.53E-22 | 53 | 116 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-18 | 61 | 76 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-16 | 62 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-18 | 76 | 97 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.8E-18 | 104 | 163 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.166 | 117 | 164 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-22 | 118 | 182 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-16 | 127 | 160 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.355 | 189 | 279 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 6.5E-25 | 191 | 273 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.3E-25 | 437 | 522 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.228 | 438 | 528 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
LLKKAYELSV LCDAEVALII FSNRGKLYEF SSTSSMMKTL EKYQKYSYSA LETTRPINDI 60 QRRNGLLKKA YELSVLCDAE VALIIFSNRG KLYEFSSTSS MMKTLEKYQK YSYSALETTR 120 PINDIQRRNG LLKKAYELSV LCDAEVALII FSNRGKLYEF SSTSSMMKTL EKYQKYSYSA 180 LETTRPINDI QNYQEYLRLK ARVEVLQRSQ RNLLGEDLAQ MNTTDLEQLE NQLEVALKNI 240 RSTKTQFMLD QLADLHHRET LLVETNNVLR SKLEESNNSQ VSLALEAGGP NIHYTNFPPQ 300 TEGFFQPAGV NSNLQIGFNQ IGGDDANVGA SSLSMHGFAS GYRFTFFICS LGAEAQVEND 360 HEFRRAYSLQ LASSEAIVEK LQEFLNGKGK SGVEKDRKQD QQASHLLKEK VCMERILERY 420 ERHSYAEKQE GAADQPPNEN WAIEHEKLKA RVEVLQRHQR NFMGEELDNI NLRGLQSLEQ 480 QLDSALKHIR SRKNQAMHES ISELHKKDKA LRERNNLLAK KIKEKEKAVV PQEQEGLLNN 540 GDVTSLMVTK PLESLNIGGS PEARCNEGTP TSTQPKTIIP PWMVTLPTDE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 5e-23 | 189 | 524 | 9 | 103 | Developmental protein SEPALLATA 3 |
4ox0_B | 5e-23 | 189 | 524 | 9 | 103 | Developmental protein SEPALLATA 3 |
4ox0_C | 5e-23 | 189 | 524 | 9 | 103 | Developmental protein SEPALLATA 3 |
4ox0_D | 5e-23 | 189 | 524 | 9 | 103 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g08370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093264 | 0.0 | BT093264.1 Soybean clone JCVI-FLGm-14C7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017427309.1 | 1e-154 | PREDICTED: MADS-box protein CMB1-like | ||||
Swissprot | Q7Y040 | 2e-84 | EJ2_SOLLC; MADS-box protein EJ2 | ||||
TrEMBL | A0A4D6KYL7 | 0.0 | A0A4D6KYL7_VIGUN; MADS-box transcription factor | ||||
STRING | XP_007155209.1 | 1e-143 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF229 | 32 | 178 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 3e-66 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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