PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g07510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | C2H2 | ||||||||
Protein Properties | Length: 1532aa MW: 174773 Da PI: 8.7176 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00049 | 1416 | 1441 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+C C++sF +k +L +H r+ + Vang11g07510.1 1416 YQCDieGCTMSFGSKQELLQHKRNiC 1441 99********************9877 PP | |||||||
2 | zf-C2H2 | 12.9 | 0.00034 | 1441 | 1463 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H Vang11g07510.1 1441 CPvkGCGKKFFSHKYLVQHRRVH 1463 9999*****************99 PP | |||||||
3 | zf-C2H2 | 11.8 | 0.00075 | 1499 | 1525 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H Vang11g07510.1 1499 YVCAepGCGQTFRFVSDFSRHKRKtgH 1525 899999****************99666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 4.0E-17 | 16 | 57 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 14.063 | 17 | 58 | IPR003349 | JmjN domain |
Pfam | PF02375 | 4.1E-14 | 18 | 51 | IPR003349 | JmjN domain |
SuperFamily | SSF51197 | 6.59E-26 | 94 | 341 | No hit | No description |
PROSITE profile | PS51184 | 34.656 | 166 | 335 | IPR003347 | JmjC domain |
SMART | SM00558 | 1.2E-47 | 166 | 335 | IPR003347 | JmjC domain |
Pfam | PF02373 | 3.6E-36 | 199 | 318 | IPR003347 | JmjC domain |
Gene3D | G3DSA:3.30.160.60 | 5.8E-5 | 1403 | 1438 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 6.6 | 1416 | 1438 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.59E-6 | 1439 | 1475 | No hit | No description |
SMART | SM00355 | 0.0045 | 1439 | 1463 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.508 | 1439 | 1468 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 1441 | 1467 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 1441 | 1463 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.7E-8 | 1468 | 1493 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.824 | 1469 | 1498 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0016 | 1469 | 1493 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1471 | 1493 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.73E-9 | 1479 | 1523 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.4E-9 | 1494 | 1522 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.62 | 1499 | 1525 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.845 | 1499 | 1530 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1501 | 1525 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1532 aa Download sequence Send to blast |
MAASEEVLPW LKSLPVAPEY RPTEAEFQNP IAYIFKIEKE ASQYGICKII PPLPPSPKKT 60 ATANLTRSQP TFTTRQQQIG FCPRRVQPVR RRVWYSGHHY SLREFEAKAK AFHKTYLKKS 120 KPKPSPLELE TLYWKATLDK PFSVEYANDI PGSAFSPLRA LRDVDHVGDT PWNMRTVSRG 180 SDSLLRFMKE EIPGVTSPMV YVAMLFSWFA WHVEDHDLHS LNYLHFGAPK TWYGVPKDAA 240 VAFEEVVRVH GYGGEINPLV TFAILGEKTT VMSPEVFVGA GVPCCRLVQN AGEFIVTFPR 300 AYHTGFSHGF NCGEAANIAT PEWLRFAKDA AIRRASINYP PMVSHFQLLY DLGLALCSRY 360 DILSDLGGMS FYWCFENHSV RPENSELVGI PGGIRAEPRS SRLKYKRNGE GETVIKELFV 420 QDVVENNDLL HTLSKGSDIV LLPRSSSDFS VCSKLRVGSR QLKVNPDFSL NVYNYEGMDS 480 SDFISNDLMF NRNHGIKQVK SFYSVKEKFV TLCERNRVLP LSSNGNIYTS SSKTLQRDSE 540 KETDQGDGLS DHRLFSCVTC GILSFSCVAI VQPREPAATY LMSADCSFFN DWIVGSGVTS 600 NKFSIAHEDA RWSKQNAQHD SNGVPIQSVK HHAQIADQNY EEALNSGREK GNTALALLAS 660 AYGNSSDSEE DRGGLDIALD DDELNAVNHS TSNGSQEMSS MPSHFQDPHT SPMVRVIRLN 720 KGDDIHSRRK DNYEYYMHKR LEQIMTPFDY SVKSEDHDNT SGVAFRNTRA VPHPTLNCSQ 780 DTHTDEDSSR MHIFYYPKIE AEAKFVAEEL GIGYTWKNTV YRQANREDEE RIQSALDSEE 840 AIPGNGDWAV KLGINLFYSA NLSRSALYSK QIPYNSVIYK AFGQSSPGSS PTEPKVYQRR 900 TIKQKKLVAG KWCGKVWMSN QVHPLLAKRD SEDVEDETSL HGWPLPDEKI ERSESNHKSN 960 TSTRKSGKKW KKSVEKGGIW EESFVERGWL SDNSIEDKSN KYQRRIIGGK RSRHIERDDT 1020 ASEGDYSPLP LHRKPITKHS ESSEDDAMSD DFLDDDSCIQ HRGRANTNKA KLIDSDVFSD 1080 DTMDYGSDWL RRGELSNEQD AISDDSLSAG SLQLHGKTPK GKYDKYITEE DVISDDQREV 1140 CLWKQRGKIS KGRQRSLSAK NEDGLKHHRQ KQQQRNLRSR QDKHFAVENI TSDDQMEGRF 1200 FKCQRRIPKN KQVKLIEEED VMSDDQLKDD FQKPQRSTRR SRQNKYNDKD VMDDLAENNF 1260 HILYRTRKRK QVKGMDEDNI DSDDQMDDIL HQQHKRTLQS KQSKAQILQQ TKQTNPRHAR 1320 NKTSHPAKQK QGVHTQMKSK AARQTKNQSG NSKDLTLHVE EEEDGGPRTR LRKRVLEKES 1380 EGKLKEKRTK REKEKNTTAA KVLVGHAKTK DEESEYQCDI EGCTMSFGSK QELLQHKRNI 1440 CPVKGCGKKF FSHKYLVQHR RVHEDDRPLK CPWKGCKMSF KWAWARTEHI RVHTGARPYV 1500 CAEPGCGQTF RFVSDFSRHK RKTGHATKKN C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 6e-81 | 8 | 349 | 6 | 346 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 6e-81 | 8 | 349 | 6 | 346 | Arabidopsis JMJ13 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1265 | 1270 | TRKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3. Demethylates both tri- (H3K27me3) and di-methylated (H3K27me2) H3K27me (PubMed:21642989, PubMed:27111035). Demethylates also H3K4me3/2 and H3K36me3/2 in an in vitro assay (PubMed:20711170). Involved in the transcriptional regulation of hundreds of genes regulating developmental patterning and responses to various stimuli (PubMed:18467490). Binds DNA via its four zinc fingers in a sequence-specific manner, 5'-CTCTGYTY-3', to promote the demethylation of H3K27me3 and the regulation of organ boundary formation (PubMed:27111034, PubMed:27111035). Involved in the regulation of flowering time by repressing FLOWERING LOCUS C (FLC) expression (PubMed:15377760). Interacts with the NF-Y complexe to regulate SOC1 (PubMed:25105952). Mediates the recruitment of BRM to its target loci (PubMed:27111034). {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:20711170, ECO:0000269|PubMed:21642989, ECO:0000269|PubMed:25105952, ECO:0000269|PubMed:27111034, ECO:0000269|PubMed:27111035}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g07510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017438995.1 | 0.0 | PREDICTED: lysine-specific demethylase REF6-like | ||||
Swissprot | Q9STM3 | 0.0 | REF6_ARATH; Lysine-specific demethylase REF6 | ||||
TrEMBL | A0A0S3R676 | 0.0 | A0A0S3R676_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155510.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5648 | 32 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 0.0 | relative of early flowering 6 |