PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g07370.1

Common Name

LR48_Vigan01g227100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 517aa MW: 58127.5 Da PI: 6.008

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g07370.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	350.6	2.5e-107	145	515	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalpps.etseknsseelaalklfsevsPilkf 93 lv+lL++cAeav+ +d++ a+ lL++l+ +a g+++qR+a++f+++L +rl+ + ++ ++ +pp + ++ s+e a++l +e++P ++f Vang11g07370.1 145 LVQLLIACAEAVACRDKSHASILLSELKANALVFGSSFQRVASCFVQGLIERLNLiQPTGPVSPMPPMmNIMDTASEEMEEAFRLVYELCPHIQF 239 689************************************************9944445566664440444445899999********** PP GRAS 94 shltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183 +h+++N+ ++ea++ge+ vH++Df+++ +G QW L+++La+ e +lRiT+vg ++l+++g+ L+ +A++lg++fef+v v Vang11g07370.1 240 GHFVTNSIVMEAFSGESFVHVVDFGMTlglrHGHQWRELMRSLANGGsERLRRLRITAVGL-----CDRLQSIGDELSVYATNLGINFEFSV-VK 328 ********************8753333889******76637778*****.....89********************9.7 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 k+le+l++e+++v+++E+laVn++lqlh +++es + +vL++v +l Pkv+v+veq+++hn++ Fl rf+e+l+yysa+fdsl++ lp+ Vang11g07370.1 329 KNLESLKPEDIEVREEEVLAVNSILQLHCVVKESRGALN---SVLQMVHGLGPKVLVMVEQDSSHNGPFFLGRFMESLHYYSAIFDSLDVMLPKY 420 *****************************88877777...8************************************************ PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 + +r+k+E++++++ei+n+v+ eg r erhe++ +Wr+r+++aGF+++p++ +++qak l + k +gy+v ee+g+lvlgWk++p+v+vS+ Vang11g07370.1 421 DTKRAKMEQFYFAEEIKNIVSREGPLRMERHERVDQWRRRMSRAGFQAAPIK--MVSQAKQWLLNGKvCEGYTVVEEKGCLVLGWKSKPIVAVSC 513 **********************************************96..677887766666668************************ PP GRAS 373 Wr 374 W+ Vang11g07370.1 514 WK 515 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	55.068	119	496	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.8E-105	145	515	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MAPPQFGALN GEIDGENLSY VFDIWATDQY SCFPLQPISE SNSCTLVLPY CDGSIRDNKR 60 VKRTVGIPVD WLGNLMSNSH SFLNTNANNC NRSRDSIPKL HFRDHIRTYT QRYLAAEAEE 120 EAPEDINSSE SDGAEEDGCH DGVRLVQLLI ACAEAVACRD KSHASILLSE LKANALVFGS 180 SFQRVASCFV QGLIERLNLI QPTGPVSPMP PMMNIMDTAS EEMEEAFRLV YELCPHIQFG 240 HFVTNSIVME AFSGESFVHV VDFGMTLGLR HGHQWRELMR SLANGGSERL RRLRITAVGL 300 CDRLQSIGDE LSVYATNLGI NFEFSVVKKN LESLKPEDIE VREEEVLAVN SILQLHCVVK 360 ESRGALNSVL QMVHGLGPKV LVMVEQDSSH NGPFFLGRFM ESLHYYSAIF DSLDVMLPKY 420 DTKRAKMEQF YFAEEIKNIV SREGPLRMER HERVDQWRRR MSRAGFQAAP IKMVSQAKQW 480 LLNGKVCEGY TVVEEKGCLV LGWKSKPIVA VSCWKC*

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MAPPQFGALN GEIDGENLSY VFDIWATDQY SCFPLQPISE SNSCTLVLPY CDGSIRDNKR  60
VKRTVGIPVD WLGNLMSNSH SFLNTNANNC NRSRDSIPKL HFRDHIRTYT QRYLAAEAEE  120
EAPEDINSSE SDGAEEDGCH DGVRLVQLLI ACAEAVACRD KSHASILLSE LKANALVFGS  180
SFQRVASCFV QGLIERLNLI QPTGPVSPMP PMMNIMDTAS EEMEEAFRLV YELCPHIQFG  240
HFVTNSIVME AFSGESFVHV VDFGMTLGLR HGHQWRELMR SLANGGSERL RRLRITAVGL  300
CDRLQSIGDE LSVYATNLGI NFEFSVVKKN LESLKPEDIE VREEEVLAVN SILQLHCVVK  360
ESRGALNSVL QMVHGLGPKV LVMVEQDSSH NGPFFLGRFM ESLHYYSAIF DSLDVMLPKY  420
DTKRAKMEQF YFAEEIKNIV SREGPLRMER HERVDQWRRR MSRAGFQAAP IKMVSQAKQW  480
LLNGKVCEGY TVVEEKGCLV LGWKSKPIVA VSCWKC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-54	152	514	26	378	Protein SCARECROW
5b3h_A	1e-54	152	514	25	377	Protein SCARECROW
5b3h_D	1e-54	152	514	25	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g07370.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017418911.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A0L9TQ80	0.0	A0A0L9TQ80_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R5X2	0.0	A0A0S3R5X2_PHAAN; Uncharacterized protein
STRING	XP_007155519.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8730	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	2e-73	RGA-like 1

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]