PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g07000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 27642.8 Da PI: 5.1944 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.4e-20 | 60 | 111 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++k +++Wv+e+r+p + k++r++lg++ t+e+Aa+a++ a+++l+g Vang11g07000.1 60 PVYRGVRQRK-NNKWVCEVRVP---NdKSTRIWLGTYPTPEMAARAHDVAALALRG 111 68*******9.8*********9...6678*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-14 | 60 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.931 | 61 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-26 | 61 | 125 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-21 | 61 | 121 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-31 | 61 | 121 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.58E-28 | 62 | 121 | No hit | No description |
PRINTS | PR00367 | 1.5E-7 | 62 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-7 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MNVNSKQSLP HSNNGYYFCS SPETSSSPNA LHSDDELHAL ASARPKRRAG RRIFKETRHP 60 VYRGVRQRKN NKWVCEVRVP NDKSTRIWLG TYPTPEMAAR AHDVAALALR GKSACLNFAD 120 SAWRLPLPAS TNAKEIRRVA AEAVVAIAAE DSCLEQLENE NVNPVVDCEV SSCGACTDED 180 GNSSKVLREF GDLDEITVPV TLGFEDMHEW LQNLADEPLR SPSFLTYVRD WTSLEDDVEI 240 SLWSFSF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g07000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017432514.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 1E-like | ||||
TrEMBL | A0A0S3R5M0 | 0.0 | A0A0S3R5M0_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155567.1 | 1e-148 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12610.1 | 6e-38 | ERF family protein |