PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g06440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 354aa MW: 41191.2 Da PI: 6.9442 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.2 | 1.1e-55 | 11 | 140 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeelv +yL+kkv++k+++l +vik+vd+yk+ePwdL++ k+ ++e+ +wyfFs++dkky+tg+r+nratk+g+Wkatg+dk++ Vang11g06440.1 11 VPPGFRFHPTDEELVGYYLRKKVASKRIDL-DVIKDVDLYKIEPWDLQElcKIGTDEQsDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAI 104 69****************************.9***************954555554445************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle Vang11g06440.1 105 YS-KHCLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 140 **.899*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-61 | 8 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.351 | 11 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.2E-29 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
LRAEMNTFSH VPPGFRFHPT DEELVGYYLR KKVASKRIDL DVIKDVDLYK IEPWDLQELC 60 KIGTDEQSDW YFFSHKDKKY PTGTRTNRAT KAGFWKATGR DKAIYSKHCL IGMRKTLVFY 120 KGRAPNGQKS DWIMHEYRLE TNENGTPPEE GWVVCRVFKK RMTTMQKVGE YDQSPCWYDE 180 QVSFMQDFES PRRISQPYAS YHQHHPCKPE LMELQYNNIP HDAFLQLPQL ESPKLTHSAP 240 SLSCSSVVPF AYETSNNKNN GSTLQFSSLS QEEQIQYCHQ QSQNSLYDNA VDQVTDWRVL 300 DKFVASQLSH NQDVSKETSY SNAPIFQVAE QISVFVLEIG NYLDLSESRS VRMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-49 | 3 | 161 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00136 | DAP | Transfer from AT1G12260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g06440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017426122.1 | 0.0 | PREDICTED: NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-144 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A0L9TR10 | 0.0 | A0A0L9TR10_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R5F1 | 0.0 | A0A0S3R5F1_PHAAN; Uncharacterized protein | ||||
STRING | XP_007155625.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1269 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-146 | NAC 007 |
Publications ? help Back to Top | |||
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