PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g06000.1
Common NameLR48_Vigan01g211400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 158aa    MW: 17425.5 Da    PI: 5.6575
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g06000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.24.8e-143441155
             AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++g+Wv+eIr+p++   + r++lg+f t+++Aa+a++ a++ ++g
  Vang11g06000.1  3 QWGKWVSEIREPRK---KSRIWLGTFPTPDMAARAHDVAALTIKG 44
                    6**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.33E-26154No hitNo description
PROSITE profilePS5103219.744152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-26153IPR001471AP2/ERF domain
SMARTSM003807.6E-28158IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-17253IPR016177DNA-binding domain
PfamPF008471.7E-8344IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MRQWGKWVSE IREPRKKSRI WLGTFPTPDM AARAHDVAAL TIKGSSAFLN FPELAAELPR  60
PTTNSPKDIQ VAAAKAAALD FRPRSHEAES ELSRGGSISN SSSNSSLKSE DDTFMDLPDL  120
SLDLSHGVDK FHYSSAWLVA GSELGFRLEE PFLWESY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g06000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017431707.11e-112PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ75e-50ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0L9TPQ41e-111A0A0L9TPQ4_PHAAN; Uncharacterized protein
STRINGXP_007155687.15e-86(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.12e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]