PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vang11g05880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 203aa MW: 22701.9 Da PI: 9.2529 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 5.8e-18 | 130 | 172 | 2 | 47 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 +y+GVr+++ +g+++AeIrdp+++g r++lg+f+ta eAaka++ Vang11g05880.1 130 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIEAAKAYD 172 8********.**********96655..******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.5E-24 | 129 | 174 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.99E-23 | 129 | 173 | No hit | No description |
PROSITE profile | PS51032 | 18.637 | 130 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.3E-12 | 130 | 173 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-21 | 130 | 188 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-16 | 130 | 175 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.8E-11 | 131 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-11 | 154 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence Send to blast |
MANAAEVSAL NRIKLHLLGE LSPLATPQNN QTNQSPSQSS SSDSCLSFDH CFTELLDPEI 60 QLPLFEFHSK PQIIDLDTPK PLTSLHKKPQ LNRKPSLQIS LPKQTEWIQF GKQDPNPAVL 120 LPENQPEKKH YRGVRQRPWG KFAAEIRDPN KRGSRVWLGT FDTAIEAAKA YDRDFQRSAV 180 VAVISSSGFW IFTTNGCVKL VI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-22 | 129 | 173 | 1 | 45 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vang11g05880.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017422112.1 | 1e-125 | PREDICTED: ethylene-responsive transcription factor 5 | ||||
Swissprot | O80341 | 2e-43 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A0L9TQV8 | 1e-123 | A0A0L9TQV8_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3R5G2 | 1e-123 | A0A0S3R5G2_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA05G05130.1 | 2e-84 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47230.1 | 2e-44 | ethylene responsive element binding factor 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|