PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang11g05690.1

Common Name

LR48_Vigan01g208700

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GATA

Protein Properties

Length: 487aa MW: 54142.8 Da PI: 6.2475

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang11g05690.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.1	3.8e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Vang11g05690.1 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	3.3E-9	1	53	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.57E-11	5	45	No hit	No description
CDD	cd00202	6.66E-17	6	54	No hit	No description
Pfam	PF00320	6.2E-14	7	41	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.2	7	40	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	7	32	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.0E-12	7	41	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAENADYEDQ 60 KVSRVKSISL NKNKEVKLVK RKQNYDNAAS GGFVPDYNQG HLKVVDEDTS NRSSSGSAIS 120 NSESCAQFGG TDASDLTGPA MSVVWDAMVP SKKRTCSGRP KPSSVEKLTR DLCTILHEQQ 180 SCFSASSEED LLLESDTPMV SVEIGHGSIL IRHPSSIARD EESEASSLSV DNKQCLMNEA 240 YSFSSTIPLY SSDHSGMNFS SQGIEKIENS AGQIMQQEKL ERHVFLSSLQ SFIILDVVNY 300 EEFMRNLTNE EQQQLLKYLP VVDTSNFIDS LKNMFSSFQF KENLTYFQQL LGEGVFDISL 360 LGTKPEEWKT LKRLVLSNMS KSKWVEHYNF LKKCENKAGK TNGPGSTAME SSNITNAKRI 420 REHDSQNQNF AELKTTMRSP IRVIINPVCE GKEVVEEGSS FSPESLFSLP HGVGGLHMLD 480 SFNYVGE

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RAENADYEDQ  60
KVSRVKSISL NKNKEVKLVK RKQNYDNAAS GGFVPDYNQG HLKVVDEDTS NRSSSGSAIS  120
NSESCAQFGG TDASDLTGPA MSVVWDAMVP SKKRTCSGRP KPSSVEKLTR DLCTILHEQQ  180
SCFSASSEED LLLESDTPMV SVEIGHGSIL IRHPSSIARD EESEASSLSV DNKQCLMNEA  240
YSFSSTIPLY SSDHSGMNFS SQGIEKIENS AGQIMQQEKL ERHVFLSSLQ SFIILDVVNY  300
EEFMRNLTNE EQQQLLKYLP VVDTSNFIDS LKNMFSSFQF KENLTYFQQL LGEGVFDISL  360
LGTKPEEWKT LKRLVLSNMS KSKWVEHYNF LKKCENKAGK TNGPGSTAME SSNITNAKRI  420
REHDSQNQNF AELKTTMRSP IRVIINPVCE GKEVVEEGSS FSPESLFSLP HGVGGLHMLD  480
SFNYVGE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang11g05690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017440988.1	0.0	PREDICTED: GATA transcription factor 26-like
Swissprot	Q8W4H1	1e-125	GAT26_ARATH; GATA transcription factor 26
TrEMBL	A0A0L9TPY1	0.0	A0A0L9TPY1_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3R571	0.0	A0A0S3R571_PHAAN; Uncharacterized protein
STRING	XP_007155707.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4424	31	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-119	GATA transcription factor 26

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]