PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g05230.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 375aa    MW: 42254 Da    PI: 5.0201
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g05230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.64.1e-52371671128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeelv +yLk+kveg ++el evi+ ++ yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v+
  Vang11g05230.1  37 LPPGFRFHPTDEELVGYYLKRKVEGLEIEL-EVIPVINFYKFDPWELPeKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVV 130
                     79****************************.99**************95344555788************************************* PP

             NAM  94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++   ++++g +ktLvfy grap g +tdWvmheyrl
  Vang11g05230.1 131 CQsdPSNVTGYRKTLVFYAGRAPLGDRTDWVMHEYRL 167
                     98766778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-6124190IPR003441NAC domain
PROSITE profilePS5100557.6437190IPR003441NAC domain
PfamPF023652.1E-2938167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
LETTCFLISC YIALVTFSSS ASQFFVTLSF NMGGATLPPG FRFHPTDEEL VGYYLKRKVE  60
GLEIELEVIP VINFYKFDPW ELPEKSFLPK RDMEWFFFCP RDRKYPNGSR TNRATKAGYW  120
KATGKDRKVV CQSDPSNVTG YRKTLVFYAG RAPLGDRTDW VMHEYRLCDD LGQPTPSFQG  180
GFALCRVIKK NEKASATKGE NKGKRAASSS INGSDTSVRF SGEPFSNSGD SSSHASQLNN  240
ESRYSSPITS PYNVAPMREI NQASLETDPS NFWISPDMIL DSSKDYPQLQ HAVSEYFPRY  300
DLPCMGTQWQ SVEHSETPSS FSYSNVNGEV EFADTLSQIG GMSPYSREWN SMDFYGNGDV  360
PYEDYDQINS ISYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-493619416169NO APICAL MERISTEM PROTEIN
1ut4_B5e-493619416169NO APICAL MERISTEM PROTEIN
1ut7_A5e-493619416169NO APICAL MERISTEM PROTEIN
1ut7_B5e-493619416169NO APICAL MERISTEM PROTEIN
3swm_A6e-493619519173NAC domain-containing protein 19
3swm_B6e-493619519173NAC domain-containing protein 19
3swm_C6e-493619519173NAC domain-containing protein 19
3swm_D6e-493619519173NAC domain-containing protein 19
3swp_A6e-493619519173NAC domain-containing protein 19
3swp_B6e-493619519173NAC domain-containing protein 19
3swp_C6e-493619519173NAC domain-containing protein 19
3swp_D6e-493619519173NAC domain-containing protein 19
4dul_A5e-493619416169NAC domain-containing protein 19
4dul_B5e-493619416169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang11g05230.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-177AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017422695.10.0PREDICTED: NAC domain-containing protein 45
SwissprotO496971e-106NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A0L9TPK90.0A0A0L9TPK9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R5D80.0A0A0S3R5D8_PHAAN; Uncharacterized protein
STRINGXP_007155764.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-108NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]