PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang11g05190.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LSD | ||||||||
Protein Properties | Length: 126aa MW: 13302.5 Da PI: 7.7601 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 46.5 | 6e-15 | 28 | 52 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP GA+sV+Ca+C++V Vang11g05190.3 28 CSGCRNLLMYPVGATSVCCAVCNAV 52 ************************9 PP | |||||||
2 | zf-LSD1 | 42.2 | 1.3e-13 | 96 | 120 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Vang11g05190.3 96 CGNCRMLLMYQYGARSVKCAVCNFV 120 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.7E-14 | 25 | 55 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.8E-12 | 28 | 52 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.1E-12 | 93 | 123 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.1E-13 | 96 | 120 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MPVPLAPYPA PPAPYTPPAN GAQSQLVCSG CRNLLMYPVG ATSVCCAVCN AVTAVPPPEF 60 RTCLSCELNH CGLSLYFEGK HQVCIESANQ VAHVNCGNCR MLLMYQYGAR SVKCAVCNFV 120 TSVGAS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang11g05190.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-110 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021593714.1 | 4e-55 | protein LOL1 | ||||
Refseq | XP_021593716.1 | 4e-55 | protein LOL1 | ||||
Refseq | XP_021593717.1 | 4e-55 | protein LOL1 | ||||
Refseq | XP_021593718.1 | 4e-55 | protein LOL1 | ||||
Swissprot | Q93ZB1 | 5e-44 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A2C9UHS8 | 9e-54 | A0A2C9UHS8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_018557m | 1e-54 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 1e-29 | lsd one like 1 |
Publications ? help Back to Top | |||
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